PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10006615m | ||||||||
Common Name | CICLE_v10006615mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 177aa MW: 20169.2 Da PI: 10.2014 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.9 | 2e-16 | 15 | 63 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien+ r tfskRr gi KKA EL +L++ae+ +++fs +gk +++ Ciclev10006615m 15 KKIENEDDRMMTFSKRRPGIYKKACELVTLTGAEIGIVLFSLSGKPFTF 63 68******************************************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.4E-21 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.301 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.89E-23 | 8 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-16 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.9E-20 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-16 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-16 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MVAKKTRGRQ NIEMKKIENE DDRMMTFSKR RPGIYKKACE LVTLTGAEIG IVLFSLSGKP 60 FTFGHPSLEA VANRFLGSNQ QHPNDNTHPL VEVHLRVRIN ELNQQHNELL RQLDKEKARE 120 KILTQPRKGK ETQPPRRETP VDELNHQELL QMDAAVDDLH KTFLAKLKEK TVAASS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006421348.1 | 1e-128 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | V4RKC8 | 1e-127 | V4RKC8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006421348.1 | 1e-128 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 4e-33 | AGAMOUS-like 57 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10006615m |
Entrez Gene | 18033284 |