PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10006587m | ||||||||
Common Name | CICLE_v10006587mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 156aa MW: 17708 Da PI: 6.513 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 30.2 | 5.8e-10 | 1 | 30 | 20 | 49 |
HHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 20 ilKKAeELSvLCdaevaviifsstgklyey 49 i KKA EL +L++ e+av++fs++gk y++ Ciclev10006587m 1 IYKKATELVTLTGSEIAVVVFSQSGKPYTF 30 78***************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 11.563 | 1 | 34 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.9E-11 | 1 | 30 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-11 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
IYKKATELVT LTGSEIAVVV FSQSGKPYTF GHPSVEAVAN RFLGMNQLPN DNIHSLVVGH 60 RQVSINELNQ QHNELRRQLD EEKEQEKMLT QMRRGKETQP RWWETPIDEH NLQELLQMDS 120 AVDDLHQIFL AKLNERAAAA AVSSPVAPSL YFHHK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006492960.1 | 2e-82 | agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_006492962.1 | 2e-82 | agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_006492963.1 | 2e-82 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | V4S2P3 | 1e-112 | V4S2P3_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006421337.1 | 1e-112 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-25 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10006587m |
Entrez Gene | 18032026 |