PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006559m
Common NameCICLE_v10006559mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 100aa    MW: 11871.5 Da    PI: 10.5292
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006559mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF24.43.8e-081539125
                     S---SHHHHHHHHHHHHHHHHHHHH CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAe 25
                     k+ien+  r +tfskRr gi KK +
  Ciclev10006559m 15 KKIENEDDRLITFSKRRSGIYKKGH 39
                     68*********************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.96E-10739IPR002100Transcription factor, MADS-box
SMARTSM004327.9E-4753IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.18739IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-9929IPR002100Transcription factor, MADS-box
PfamPF003192.8E-71637IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-92944IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MAAKKTKGRQ KIEIKKIENE DDRLITFSKR RSGIYKKGHH TPLNQQPHDN THPLVEAHRH  60
VRINELNQQH NELLRQLDEE KELEKNLKQM RRGNETQLH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006492961.16e-42agamous-like MADS-box protein AGL62
TrEMBLA0A2H5QIE08e-65A0A2H5QIE0_CITUN; Uncharacterized protein
TrEMBLV4SC808e-65V4SC80_9ROSI; Uncharacterized protein
STRINGXP_006421341.11e-65(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.11e-13AGAMOUS-like 57