PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006503m
Common NameCICLE_v10006503mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24510.7 Da    PI: 8.5343
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006503mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.72.6e-171561147
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                     k+ien+  r +tfskRr gi KKA+EL +L++ae+ +++fs++gk +
  Ciclev10006503m 15 KKIENEDDRMITFSKRRSGIDKKASELVTLTGAEIGIVVFSPSGKPF 61
                     68******************************************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.4E-26766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.815767IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-25892IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-17929IPR002100Transcription factor, MADS-box
PfamPF003197.6E-221663IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-172944IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-174465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MAAKKTRGRQ KIEVKKIENE DDRMITFSKR RSGIDKKASE LVTLTGAEIG IVVFSPSGKP  60
FSFGHPSLEA VANRFLGSSQ EHPNDNTHPL VEAHRRVRIN ELNQQHNELL RQVDEEKARE  120
KILKQNRKGR ETQPHWWETP VDELNHQELL QMDAAIDDLH KTFLAKLNEK TAAASSSMAH  180
WHFLCIFVIN NVSHFPLNLA FVYRKSDEAT SPND*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421350.11e-159agamous-like MADS-box protein AGL61
TrEMBLV4S6U71e-158V4S6U7_9ROSI; Uncharacterized protein
STRINGXP_006421350.11e-159(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-42AGAMOUS-like 61