PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006480m
Common NameCICLE_v10006480mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 333aa    MW: 36204 Da    PI: 9.2257
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006480mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.7e-05628123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y C+ C+k F r  nL++H + H
  Ciclev10006480m  6 YICEVCHKGFQRDQNLQVHRKGH 28
                     89******************988 PP
2zf-C2H213.30.0002582104123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H + +
  Ciclev10006480m  82 WKCDKCSKCYAVQSDWKAHTKIC 104
                      58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.88E-5528No hitNo description
PROSITE profilePS5015710.492628IPR007087Zinc finger, C2H2
SMARTSM003550.041628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003553004777IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.88E-577102No hitNo description
SMARTSM0035510082109IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MATNRYICEV CHKGFQRDQN LQVHRKGHNL PWKLMQRPTT QVKKGVYVCP KPNCVHHHPS  60
RALGDLTGVK KHFCRKHGEK KWKCDKCSKC YAVQSDWKAH TKICGTREHR CDCGIIFSSQ  120
NLAASGGMAQ SQAQELFSSS MPSTDSDSNT NIRMNPSISR DNIENSLRPL SMSSVGVMVS  180
SNLDPILTSR VSKPYLSSVC GSNACAMAIG SSFTSSTALL QKAAEMGTMM RFTVFSSSSI  240
TSSGFLRQGS SNGLYVDKNL EPGDQRESCS LLQSKNGNAA SALVQVHMGG SEKMTADFLW  300
AEVEQPVGSG HSNYGKKRSL GGTVVDLGYS NE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-1878121346Zinc finger protein JACKDAW
5b3h_F8e-1878121346Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024448903.11e-134protein indeterminate-domain 2-like
SwissprotO227591e-72IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLV4S1B90.0V4S1B9_9ROSI; Uncharacterized protein
STRINGXP_006420832.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1801789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.13e-71C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]