PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10006469m | ||||||||
Common Name | CICLE_v10006914mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 204aa MW: 24071.9 Da PI: 8.7023 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 13 | 57 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ Ciclev10006469m 13 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 57 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.46E-17 | 2 | 67 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-24 | 3 | 61 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.058 | 8 | 62 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 12 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-14 | 13 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.61E-11 | 17 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
LRWVNYLRPD LKRGQITPHE ESIILELHAR WGNRWSTIAR SLPGRTDNEI KNYWRTHFKK 60 KAKISSDNTD KAKNRLLKRQ QFHQQQQHQH QHQHQQQDMQ LNQLDLKRIM FLLDESEHRV 120 PYIPQAPRPE FMGYHPNTIT DQDQQANNFF YNWMPNGNNN SAIMTEPSNE EILWDGLWNL 180 DDFGAAACAT SKASFHNLVA PFC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-13 | 2 | 62 | 48 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006420399.2 | 1e-153 | transcription factor MYB120 | ||||
TrEMBL | A0A067EXV5 | 1e-150 | A0A067EXV5_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5P2I9 | 1e-150 | A0A2H5P2I9_CITUN; Uncharacterized protein | ||||
TrEMBL | V4S9P5 | 1e-150 | V4S9P5_9ROSI; Uncharacterized protein | ||||
TrEMBL | V4U365 | 1e-151 | V4U365_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006420399.1 | 1e-152 | (Citrus clementina) | ||||
STRING | XP_006420401.1 | 1e-151 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3107 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 2e-57 | myb domain protein 305 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10006469m |
Entrez Gene | 18032378 |