PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006463m
Common NameCICLE_v10006463mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 362aa    MW: 39841.3 Da    PI: 4.4786
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006463mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.000493133521054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      + R d+i +a+  L+ ++P a    ++K    + L +A++Y++sL
  Ciclev10006463m 313 QSRKDKIHTALRILQGIIPGA----NGKDP-LSLLDEAIDYLQSL 352
                      56899***************8....55554.66**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.543303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-4313355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-5314354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MVKAHESWIY RQHSAWQLPD LNCMRTSLDP RQPECLPSLI APENYMFSAN AALPGYVSPG  60
FANLKTEQIN GAHKALQILP PRFQNLVPSP YPYLNEIQPA FPCGFSEQAA PNEKLGSLQK  120
GLLVFDQSGN QTQLVYSSVC PSVLNTPATL KKEVSVNGFL QDKAIKRDQF TSVKPLLHEE  180
FDENHISGKE CEMHEDTEEI NALLYSDGDD DYSNGDDSED DEVKSTDHSP VAIEGKYEKH  240
DLTLEISEEV ASSDGPNKRQ KLLNGGYNKS SQTDTACSVQ LEGSHECDND AESGYANGQT  300
QKEEVDFILG NMQSRKDKIH TALRILQGII PGANGKDPLS LLDEAIDYLQ SLKLKAVALG  360
V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006420845.10.0transcription factor bHLH143
RefseqXP_024036030.10.0transcription factor bHLH143
TrEMBLV4S5G30.0V4S5G3_9ROSI; Uncharacterized protein
STRINGXP_006420845.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55461014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67110.15e-08bHLH family protein