PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10005777m | ||||||||
Common Name | CICLE_v10005777mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 235aa MW: 26616.1 Da PI: 7.1989 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.7 | 3.6e-07 | 84 | 129 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er RR+r ++ + L ++lP+ +K++K +i++ A + I++L Ciclev10005777m 84 RHVINERMRRERERQNYLALHSMLPPG-----TKNDKNSIVKTAANMIHEL 129 5899*********************97.....8***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.02E-11 | 79 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.725 | 80 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-6 | 84 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-4 | 84 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-4 | 86 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MDEFLGDQFH GEGDIFFWLD NEALPVNQSA FVAYANRPRT EFVSQNAGNG SNSLSANKRM 60 IQFLRKIQPA KMEHPELDSE RGHRHVINER MRRERERQNY LALHSMLPPG TKNDKNSIVK 120 TAANMIHELR CCKQELERKN YELESNLGLK NGGTKIRVNV DNPTSGVDSM LEVLKCLKDL 180 GSSTRSIQAE FSDQKLAAVL DIETQMGAGA VEKDVQRALQ KVEDKLLFRH YQEG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 94 | RMRRER |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006420116.1 | 1e-176 | transcription factor bHLH92 isoform X1 | ||||
TrEMBL | V4S8X4 | 1e-175 | V4S8X4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006420116.1 | 1e-175 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9602 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 1e-39 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10005777m |
Entrez Gene | 18032647 |