PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005410m
Common NameCICLE_v10005087mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 329aa    MW: 36185 Da    PI: 7.3473
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005410mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.1e-08248295455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  Ciclev10005410m 248 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 295
                      8*************************9....888999999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.77E-8242299No hitNo description
SuperFamilySSF474593.14E-15242313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-15244312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.519244294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-6248295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-8250300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEPTEHRSSA IGPSLDQNAL DSLQFNEEIQ HLMTLPPENA NSFTALLELP APQAVELLHH  60
HHHRSPESNC STAKLVTAKA DGHGLHHPHA TPHHFNPGAN LTFPSDISLI ERAVRFSVFA  120
GINNSDNNHN DNNNNNHKIS SKIDKNNNNN NCSPETTGSV PSNSSGNLGK VKNEPAESDS  180
DNNNPNSPQP LDIKTENQNQ KSAKRKEREK KGKAATKKSK SGANDSSEDA EKLPYVHVRA  240
RRGQATDSHS LAERARREKI NARMKLLQEL VPGCNKISGT ALVLDEIINH VQSLQRQVEF  300
LSMRLAAVNP RIDFNLDSLF VAEEVRNL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421482.10.0transcription factor bHLH48 isoform X1
SwissprotQ8VZ026e-85BH048_ARATH; Transcription factor bHLH48
TrEMBLV4RKQ80.0V4RKQ8_9ROSI; Uncharacterized protein
STRINGXP_006421482.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42300.18e-80bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]