PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005403m
Common NameCICLE_v10005403mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 331aa    MW: 35995.1 Da    PI: 7.0644
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005403mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.85.6e-36331242102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d++++++isw+++g++fvv++++ fa+++Lp+yFkh+nf+SFvRQLn+YgFkkv  ++         weF+++ F++g+++ll+
  Ciclev10005403m  33 FLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDR---------WEFSNDCFRRGEQQLLR 117
                      9*****************************************************************99.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k 
  Ciclev10005403m 118 EIQRRKI 124
                      ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.4E-3823116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.4E-5629122IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.8E-3530122IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.0E-3233122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-193356IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-197183IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407296IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-198496IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MTPPPTAMEQ NGDSTPSPTT TASDSQRSMP TPFLTKTYQL VDDQAIDDVI SWNKDGTTFV  60
VWNPTIFARD LLPRYFKHNN FSSFVRQLNT YGFKKVVPDR WEFSNDCFRR GEQQLLREIQ  120
RRKIQSAATA QPVTVAVPAV VPVAKPIVSP SNSGEEQVIS SNSSPAAGAA GVTAHTCGGG  180
HTCAEIVEEN DKLRKENAQL NKQVAEMKNL CNNIFSLMSN YTRGGVGGGD GGGQAAMELL  240
SEKRFSCGEG EEMSTRLFGV PIGAKRAREV NCGGEPSSST AENATRLQLQ LKSEPLDYQM  300
GGGGGGDHCD RQETPWLRQS HHRPNQRVCN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-243312229129Heat shock factor protein 1
5d5v_B2e-243312229129Heat shock factor protein 1
5d5v_D2e-243312229129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.101480.0fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421885.10.0heat stress transcription factor B-2a
RefseqXP_006490352.10.0heat stress transcription factor B-2a
SwissprotQ9SCW44e-96HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLV4S8H10.0V4S8H1_9ROSI; Uncharacterized protein
STRINGXP_006490352.10.0(Citrus sinensis)
STRINGXP_006421885.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.14e-91heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]