PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005002m
Common NameCICLE_v10005002mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 435aa    MW: 47106.3 Da    PI: 7.8633
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005002mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.5e-08113133526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      lCr++ + G C yG++CkF H+
  Ciclev10005002m 113 LCRNWVQ-GNCMYGEKCKFLHS 133
                      8******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.1833258IPR000571Zinc finger, CCCH-type
SMARTSM003560.0713257IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.164108135IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4109134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6110133IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5113133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-8113131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.5E-15132242IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.0E-5139178IPR001680WD40 repeat
SuperFamilySSF509781.65E-47140430IPR017986WD40-repeat-containing domain
PfamPF004005.2E-4141178IPR001680WD40 repeat
PROSITE profilePS5029420.408146395IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.249146187IPR001680WD40 repeat
PROSITE patternPS006780165179IPR019775WD40 repeat, conserved site
PRINTSPR003201.4E-6165179IPR020472G-protein beta WD-40 repeat
SMARTSM0032012218255IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.4E-31243429IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.0027262299IPR001680WD40 repeat
PfamPF004000.0057266299IPR001680WD40 repeat
PROSITE profilePS5008212.747269308IPR001680WD40 repeat
PRINTSPR003201.4E-6286300IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780286300IPR019775WD40 repeat, conserved site
SMARTSM003203.7E-4302339IPR001680WD40 repeat
PfamPF004000.004304338IPR001680WD40 repeat
PRINTSPR003201.4E-6326340IPR020472G-protein beta WD-40 repeat
SMARTSM003204.6343386IPR001680WD40 repeat
SMARTSM003209389426IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MDFDAHGGNK RVFHRLGGGG GDGGGGGLST ADTRQKVCNY WRAGKCNRFP CPYLHRELPL  60
PPAATANGAA AKRFANNTWG RNNNFNNHSN NYRAGNSKNS NINNRAVIKT DILCRNWVQG  120
NCMYGEKCKF LHSWTVGDGF KLLTQLEGHQ KVVSGITLPS GSDKLYSGSK DETVRVWDCA  180
SGQCAGVINL GGEVGCMISE GPWIFIGVTN FVKAWNTQTN TDLSLSGPVG QVYAMAVGND  240
LLFAGTQDGA ILAWKFNVTT NCFEPAASLK GHSLAVVSLV VGANKLYSGS MDNSIRVWNL  300
ETLQCIQTLT EHTSVVMSLL CWDQFLLSCS LDKTIKVWFA TDSGNLEVTY THNEEHGMLA  360
LCGMPDSEGK PVLLCSCNDN SVRFYDLPSF AERGKIFAKQ EIRAIQLGPG GLFFTGDGTG  420
QVRVWQWCNG PVAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A4e-201224318323Tako8
6g6n_A4e-201224318323Tako8
6g6n_B4e-201224318323Tako8
6g6n_C4e-201224318323Tako8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.7770.0fruit| vegetative tissue
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6351679e-35AJ635167.1 Mangifera indica microsatellite DNA, locus mMiCIR005.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421832.10.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLV4S4140.0V4S414_9ROSI; Uncharacterized protein
STRINGXP_006421832.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1