PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10004984m | ||||||||
Common Name | CICLE_v10004984mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | G2-like | ||||||||
Protein Properties | Length: 440aa MW: 49189.3 Da PI: 5.9066 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.5 | 1.3e-32 | 200 | 254 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe+Fveav++LGG e+AtPk +l+lm+v+ Lt++hvkSHLQkYR+ Ciclev10004984m 200 KSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRT 254 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.21 | 197 | 257 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-31 | 199 | 257 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.55E-18 | 199 | 255 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-24 | 200 | 254 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.4E-11 | 202 | 253 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.2E-21 | 285 | 331 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MSNPQQISAS SSRFPDNMHF SSVSPHGRYS QNSPFISQSL RDEARLRSTH FSPSEGQPTP 60 LINHPEENKD NSWCIDPLQD FLDFPENDPG QTGLLESNTG DIASDDRAKR IEWWADQLIS 120 VEDGPEPNWS EVLADVNVTD ARQKVCSSIE HKVLKPSTDI PTQHPQVHPQ VHPQGQQHQP 180 VSNEEFHAVA NPLSMTPANK SRMRWTPELH EAFVEAVNRL GGGERATPKG VLKLMNVENL 240 TIYHVKSHLQ KYRTARHRPE SSEGTSEKKS NPTEDMKSLD TKTTMSITEA LRLQMEVQKR 300 LHEQLEIQRN LQLRIEEQGR HLQMMFEQRK QMENEKSKAS SSSLENPSAP LFESKQHSSP 360 NETSMATELD VAKTGADTSH VISAPEDSSA SLNQKQKAPE TKTGEEVDPD DDESGHKPVK 420 RARSEATAFS PKSALGNTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-29 | 200 | 258 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-29 | 200 | 258 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-29 | 200 | 258 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-29 | 200 | 258 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-29 | 200 | 258 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-29 | 200 | 258 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-29 | 200 | 258 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-29 | 200 | 258 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00532 | DAP | Transfer from AT5G29000 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006420652.1 | 0.0 | protein PHR1-LIKE 1 isoform X2 | ||||
Swissprot | Q8GUN5 | 5e-93 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | V4S0U9 | 0.0 | V4S0U9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006420652.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM856 | 27 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.3 | 1e-93 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10004984m |
Entrez Gene | 18033520 |
Publications ? help Back to Top | |||
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