PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10004715m
Common NameCICLE_v10004715mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 530aa    MW: 59502.3 Da    PI: 5.0997
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10004715mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.71.1e-1071525221374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsP 89 
                      lv+lLl+cAeav  +d++la ++L+++   a+p gd++qR+  +f+ +L++rl+   +++ +  + +  +  +      +e++ a++l ++++P
  Ciclev10004715m 152 LVHLLLACAEAVGCRDTKLAVSMLSQIWASATPWGDSLQRVSYCFALGLKSRLSL-LQNINANGTFTGGAM-DvplitREEKMEAFQLVYQTTP 243
                      68***************************************************98.555555555544443.347777899999********** PP

             GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                      ++ f++++aN+aI +a++g++ +HiiD++++  lQWp+L+++LasRpegpp++RiT + s++  +  el++  +   + A++lg+++ef+++ +
  Ciclev10004715m 244 YISFGFMAANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQ--NLSELKASMKPVLHDATSLGINLEFSMISE 335
                      ************************************************************66..889999999999999************744 PP

             GRAS 184 k.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                        + + l+ e+L++++gEal Vn++++lh+ ++es  + +   ++L+++k+l+P++++vveq+a+hn++ Fl rfle+l+yysa+fdslea+lp
  Ciclev10004715m 336 PvTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLK---AILQAIKRLNPTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLP 426
                      3588999*************************88776666...9************************************************** PP

             GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                      r+s  r+++Er  +++ei+n+va eg++r+erhe++++Wr++l++aGF+ v l++   +qa+++l+ ++ dgy++ +e+g+l+lgWk+rp++ +
  Ciclev10004715m 427 RNSPLRMNIERLHFAEEIRNIVAYEGSDRIERHERAHQWRRQLGRAGFQLVGLKS--LSQARMMLSVYGCDGYTLACEKGCLLLGWKGRPIMLA 518
                      ****************************************************986..89*********************************** PP

             GRAS 371 SaWr 374
                      SaW+
  Ciclev10004715m 519 SAWQ 522
                      ***6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.555126504IPR005202Transcription factor GRAS
PfamPF035143.9E-105152522IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MHESFNHDLA IRRFCPARVE QEQREWEETM NELELLSPYH EDAITSTSQD LAASEVDEFV  60
DSFINMDHED KDDDREINKS PASADHEAET FSMVNDGYGD QVSMMIEGND HHLETMSIDF  120
SGEDHDHHFT VVPEMVPSVE EVSHGVDQGL HLVHLLLACA EAVGCRDTKL AVSMLSQIWA  180
SATPWGDSLQ RVSYCFALGL KSRLSLLQNI NANGTFTGGA MDVPLITREE KMEAFQLVYQ  240
TTPYISFGFM AANEAIRQAA QGKDSLHIID LGMERTLQWP SLIRSLASRP EGPPRIRITC  300
LISNQNLSEL KASMKPVLHD ATSLGINLEF SMISEPVTPS LLTRENLDLR EGEALFVNSI  360
MHLHKYVKES RGSLKAILQA IKRLNPTLLT VVEQDANHNG PFFLGRFLES LHYYSAIFDS  420
LEASLPRNSP LRMNIERLHF AEEIRNIVAY EGSDRIERHE RAHQWRRQLG RAGFQLVGLK  480
SLSQARMMLS VYGCDGYTLA CEKGCLLLGW KGRPIMLASA WQVNNASSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-6315952125377Protein SCARECROW
5b3h_D3e-6315952125377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422278.20.0DELLA protein RGL1
RefseqXP_006493798.10.0DELLA protein RGL1-like
TrEMBLV4RML40.0V4RML4_9ROSI; Uncharacterized protein
STRINGXP_006422278.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17612910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-81RGA-like 1