PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10004423m
Common NameCICLE_v10004423mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 732aa    MW: 79267.7 Da    PI: 6.5082
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10004423mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07305325526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f++ G C++Gd C +aHg
  Ciclev10004423m 305 PCPDFRK-GACRRGDMCEYAHG 325
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127969.8E-1283156IPR020683Ankyrin repeat-containing domain
CDDcd002041.58E-1686165No hitNo description
SuperFamilySSF484032.8E-1786165IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.2E-1986167IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.48487120IPR002110Ankyrin repeat
PROSITE profilePS5029719.91687180IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001387117IPR002110Ankyrin repeat
PRINTSPR014156.3E-588103IPR002110Ankyrin repeat
PROSITE profilePS5008812.209122157IPR002110Ankyrin repeat
SMARTSM002481.4E-4122154IPR002110Ankyrin repeat
PRINTSPR014156.3E-5141155IPR002110Ankyrin repeat
SMARTSM003564.0E-6300326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582305327IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-5305325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4305327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4333363IPR000571Zinc finger, CCCH-type
SMARTSM0035638335358IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MCCGPERLNR TPSPRSPHIS FDESRHTNVD MNHLTVETDD AFASLLELAA NNDVEGFKRS  60
IVCDPSGVDE VGLWYGRQKG SKQMVNEQRT PLMVAATYGS IDIIRLILSE SGADVNLSCG  120
NDKSTALHCA ASGGALNAVD VVKLLLAAGA DPNLVDAKGH RPVDVIVVPP KFQDVRLTLE  180
ELLATDGSVE RNLRVSTTTS NSNSPPLSPA LENGSPTSAS GSPMKSMSVD APSFSVSEKK  240
EYPIDPSLPD IKNSIYSTDE FRMYSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH  300
YSCVPCPDFR KGACRRGDMC EYAHGVFECW LHPAQYRTRL CKDGTSCARR VCFFAHTPEE  360
LRPLYVSTGS AVPSPRSSTS GATAMDFAAA LSLLPGSPSS VNVMSPSPFT PPMSPSANGI  420
SHSNVAWPQP NVPALHLPGS NLQSSRLRSS LNARDMPVDD FNMLPDFDVQ QQQLLNELST  480
LSQPTLSSSL NRSGRMKTLT PSNLDDLFSA ESSSPRYSDQ ALAAAVFSPT HKSAVLNQFQ  540
QQQQSMLSPI NTNFSPKNVD HPLLQASFGV PSSSGRMSPR NVEPISPMGS RVSLLAQREK  600
QQQFRSLSSR ELGSNSAAVV GSPVNSWSKW GSSNGKPDWA VTTDELGKLK RSSSFELGNG  660
EEPDLSWVQS LVKESPTEVK EKLATPVSGI AAASSSSEGS NRNPQIESVD HAVLGAWLEQ  720
MQLDQLVAQQ N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421436.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_024036574.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2H5Q9210.0A0A2H5Q921_CITUN; Uncharacterized protein
TrEMBLV4SCL20.0V4SCL2_9ROSI; Uncharacterized protein
STRINGXP_006421436.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]