PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10004395m

Common Name

CICLE_v10004395mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 755aa MW: 86199.3 Da PI: 6.6262

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10004395m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.8	5.8e-21	56	149	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w+vt +++ HnHel Ciclev10004395m 56 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGFPQMKPSDDGKMQRNRKSSRCGCQAYMRIVKRVdfdVPEWHVTGFSNVHNHELL 149 6*************9998874556679***************9***************99887676789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.8E-18	56	149	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.5E-18	272	364	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.755	536	584	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.4E-6	558	581	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-5	559	586	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 755 aa Download sequence Send to blast
MSEGNSMASE NGTDLSQDDT GTIEENPEET ILSQQTSVNL VPFIGQRFVS QDAAYEFYCS 60 FAKQCGFSIR RHRTRGKDGV GRGVTRRDFT CHRGGFPQMK PSDDGKMQRN RKSSRCGCQA 120 YMRIVKRVDF DVPEWHVTGF SNVHNHELLK LNEVRLLPAY CSITPDDKTR ICMFAKAGMS 180 VRQMLRLMEL EKGVKLGCLP FTEIDVRNLL QSFRNVNRDY DAIDLIAMCK KMKDKNPNFQ 240 YDFKMDGHNR LEHIAWSYAS SVQLYEAFGD ALVFDTTHRL DSYDMLFGIW VGLDNHGMAC 300 FFGCVLLRDE NMQSFSWSLK TLLGFVNGKA PQTLLTDQNI WLKEAVAVEM PETKHAVYIW 360 HILAKLSDSL PTFLGSSYDD WKAEFYRLYN LELEEDFEEE WSKMVNKYGL REYKHITSLY 420 ALRTFWALPF LRHYFFAGLL SPCQSEAINA FIQRILSAQS QLDRFVERVA EIVEFNDRAA 480 TKQKMQRKLQ KICLKTGSPI ESHAATVLTP YAFGKLQEEL LMAPQYASLL VDEGCFQVKH 540 HTETDGGCKV IWIPCQEHIS CSCHQFEFSG ILCRHVLRVL STDNCFQIPD QYLPIRWRNV 600 TSASTNPLRT TTRDRSEKIQ LLESMASALV SESLETEERL DVACEQVAMV LNHVKDLPRP 660 IHGMDDIAYA CPSHSLILPE VEDTDGIVQS ITVGNSHESF TLGKLKERRP RDGVDVSRKR 720 RHCSEPCCRH FGHDASSCPI MGSDTLNAEL LGYL*

Sequence ? help Back to Top

Protein Sequence Length: 755 aa Download sequence Send to blast

MSEGNSMASE NGTDLSQDDT GTIEENPEET ILSQQTSVNL VPFIGQRFVS QDAAYEFYCS  60
FAKQCGFSIR RHRTRGKDGV GRGVTRRDFT CHRGGFPQMK PSDDGKMQRN RKSSRCGCQA  120
YMRIVKRVDF DVPEWHVTGF SNVHNHELLK LNEVRLLPAY CSITPDDKTR ICMFAKAGMS  180
VRQMLRLMEL EKGVKLGCLP FTEIDVRNLL QSFRNVNRDY DAIDLIAMCK KMKDKNPNFQ  240
YDFKMDGHNR LEHIAWSYAS SVQLYEAFGD ALVFDTTHRL DSYDMLFGIW VGLDNHGMAC  300
FFGCVLLRDE NMQSFSWSLK TLLGFVNGKA PQTLLTDQNI WLKEAVAVEM PETKHAVYIW  360
HILAKLSDSL PTFLGSSYDD WKAEFYRLYN LELEEDFEEE WSKMVNKYGL REYKHITSLY  420
ALRTFWALPF LRHYFFAGLL SPCQSEAINA FIQRILSAQS QLDRFVERVA EIVEFNDRAA  480
TKQKMQRKLQ KICLKTGSPI ESHAATVLTP YAFGKLQEEL LMAPQYASLL VDEGCFQVKH  540
HTETDGGCKV IWIPCQEHIS CSCHQFEFSG ILCRHVLRVL STDNCFQIPD QYLPIRWRNV  600
TSASTNPLRT TTRDRSEKIQ LLESMASALV SESLETEERL DVACEQVAMV LNHVKDLPRP  660
IHGMDDIAYA CPSHSLILPE VEDTDGIVQS ITVGNSHESF TLGKLKERRP RDGVDVSRKR  720
RHCSEPCCRH FGHDASSCPI MGSDTLNAEL LGYL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006419438.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_024038373.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	V4RFQ0	0.0	V4RFQ0_9ROSI; Uncharacterized protein
STRING	XP_006419438.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Ciclev10004395m
Entrez Gene	18031721

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]