PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10004376m

Common Name

CICLE_v10004376mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 772aa MW: 88989.6 Da PI: 8.8565

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10004376m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.8	2.8e-21	59	134	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA++vGF++r+ + ++s+++g++ +r+fvCskeg++ + +rtgC a ++v+k+++gkw++++++++HnHe+ Ciclev10004376m 59 EFYSQYAERVGFKIRIGQLYRSRTDGSVSSRRFVCSKEGFQLN--------------SRTGCSAYIRVQKRDSGKWVLDQMKKDHNHEFD 134 6*************************************876..............589*************************985 PP
2	FAR1	66.7	6e-21	210	285	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA+++GF+vr+ + +sk++g++t+r+fvCskeg++++ +r+gC a +++k+++ g w v++l+++HnH+l Ciclev10004376m 210 QFYQAYAEKTGFRVRIGQLFRSKNDGSVTSRRFVCSKEGFQHP--------------SRVGCGAFMRIKRKEFGSWIVDRLQKDHNHDLE 285 6*************************************999..............4899*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.4E-17	59	133	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.1E-16	210	285	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.0E-29	385	477	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.878	647	693	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.3E-6	668	695	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	5.5E-5	668	690	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 772 aa Download sequence Send to blast
MRSSNTDLNT EVCENAMVLN AYPIGVLSVI DNVNGADEGW SRMEPSVGLE FDTADDAREF 60 YSQYAERVGF KIRIGQLYRS RTDGSVSSRR FVCSKEGFQL NSRTGCSAYI RVQKRDSGKW 120 VLDQMKKDHN HEFDSAGENS LPTAKQRNHS AKKSSVNVSH RPKIKSFADG GSCPSGVINF 180 KRLRSSAGEG ECIPEPYAGL EFNSANEAYQ FYQAYAEKTG FRVRIGQLFR SKNDGSVTSR 240 RFVCSKEGFQ HPSRVGCGAF MRIKRKEFGS WIVDRLQKDH NHDLESQMGA NKKTFATSKK 300 FIEDVSGGLD SVDLAEINNG SIIKISQENN IGSAWYRVLF EYFQTRQSED TGFFHSVEVD 360 NGRCMSVFWA DGRSRFSCSQ FGDAIIFDTS YRKTNYLIPF ATFVGINHHR HPVLLGCALV 420 ANESKESFTW LFNTWIRAMF GCHPKTIIAD QDKAIQQAIA RIFPRTHHRF SMWQIRAKER 480 ENLRSMSNQF VFEYNKCIYQ SQSIAQFSTM WTALIEKYGQ RDNIWLKEMY EKRESWVPLY 540 LRRSFFAGIP IGKSIESFFG ATLTAQTPLR EFLSRYTQGL ERRREEERKE DFNTWNLQAF 600 LQTKEPIEEQ CRRLYTRNMF KIFQNELLQS FDYLVTKTNE EATIVRYLVR KCGNEDEKHV 660 VTFSALNVSC SCQMFEFEGM LCGHILKVFN LMNVKEIPSQ YILHRWTRNA EYGVLRDTES 720 GFSAQELKAL MVWSLRETAS KYVESGTGSL EKHKLAYEIM REGGNKLCWQ R*

Sequence ? help Back to Top

Protein Sequence Length: 772 aa Download sequence Send to blast

MRSSNTDLNT EVCENAMVLN AYPIGVLSVI DNVNGADEGW SRMEPSVGLE FDTADDAREF  60
YSQYAERVGF KIRIGQLYRS RTDGSVSSRR FVCSKEGFQL NSRTGCSAYI RVQKRDSGKW  120
VLDQMKKDHN HEFDSAGENS LPTAKQRNHS AKKSSVNVSH RPKIKSFADG GSCPSGVINF  180
KRLRSSAGEG ECIPEPYAGL EFNSANEAYQ FYQAYAEKTG FRVRIGQLFR SKNDGSVTSR  240
RFVCSKEGFQ HPSRVGCGAF MRIKRKEFGS WIVDRLQKDH NHDLESQMGA NKKTFATSKK  300
FIEDVSGGLD SVDLAEINNG SIIKISQENN IGSAWYRVLF EYFQTRQSED TGFFHSVEVD  360
NGRCMSVFWA DGRSRFSCSQ FGDAIIFDTS YRKTNYLIPF ATFVGINHHR HPVLLGCALV  420
ANESKESFTW LFNTWIRAMF GCHPKTIIAD QDKAIQQAIA RIFPRTHHRF SMWQIRAKER  480
ENLRSMSNQF VFEYNKCIYQ SQSIAQFSTM WTALIEKYGQ RDNIWLKEMY EKRESWVPLY  540
LRRSFFAGIP IGKSIESFFG ATLTAQTPLR EFLSRYTQGL ERRREEERKE DFNTWNLQAF  600
LQTKEPIEEQ CRRLYTRNMF KIFQNELLQS FDYLVTKTNE EATIVRYLVR KCGNEDEKHV  660
VTFSALNVSC SCQMFEFEGM LCGHILKVFN LMNVKEIPSQ YILHRWTRNA EYGVLRDTES  720
GFSAQELKAL MVWSLRETAS KYVESGTGSL EKHKLAYEIM REGGNKLCWQ R*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006419768.1	0.0	protein FAR1-RELATED SEQUENCE 7
Refseq	XP_024047968.1	0.0	protein FAR1-RELATED SEQUENCE 7
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	V4RGF3	0.0	V4RGF3_9ROSI; Uncharacterized protein
STRING	XP_006419768.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5730	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	Ciclev10004376m
Entrez Gene	18032246

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]