PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10004050m | ||||||||
Common Name | CICLE_v10004050mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 210aa MW: 23933.1 Da PI: 8.9417 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 92.2 | 4.5e-29 | 22 | 72 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++YkeC+kNhAas+Ggha DGC+Efmp ++l+CaACgCHRnFHRrev Ciclev10004050m 22 FNYKECMKNHAASIGGHANDGCCEFMPR-----ADDSLTCAACGCHRNFHRREVRG 72 68*************************9.....3479***************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-16 | 22 | 80 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.0E-25 | 23 | 70 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 8.4E-24 | 23 | 70 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.187 | 24 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.32E-18 | 120 | 188 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.9E-29 | 125 | 190 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.1E-26 | 130 | 186 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MDLSLVPYKH QRPHPQQEPN IFNYKECMKN HAASIGGHAN DGCCEFMPRA DDSLTCAACG 60 CHRNFHRREV RGQLLPQPKR LLLFKDPTKL VGAVDRYDEY DRRSETPERE EVNLNVCPPG 120 NVGPATGKSK RQRTKFTQEQ KDKMLEFAER IGWRMQRQDD VALNQFCNEV GVKRHVLKVW 180 MHNNKNASHR RKDESASQSP TEAAPPAAA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 7e-26 | 129 | 187 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 132 | KSKRQR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006434579.1 | 1e-158 | zinc-finger homeodomain protein 1 | ||||
Swissprot | Q9SB61 | 6e-49 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | V4V6X6 | 1e-157 | V4V6X6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006434579.1 | 1e-157 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21103 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 3e-51 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10004050m |
Entrez Gene | 18041062 |
Publications ? help Back to Top | |||
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