PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10003699m
Common NameCICLE_v10003699mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 166aa    MW: 18717.7 Da    PI: 10.2528
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10003699mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.21.3e-1997131135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      Cs+C tt+Tp+WR gp g+ktLCnaCG++y++ +l
  Ciclev10003699m  97 CSHCETTQTPQWRMGPLGPKTLCNACGVRYKSGRL 131
                      *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.66E-1589151No hitNo description
SMARTSM004012.7E-1691141IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.42691127IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-1595129IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.22E-1796147No hitNo description
PROSITE patternPS00344097122IPR000679Zinc finger, GATA-type
PfamPF003202.6E-1797131IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
LASPLCVPQD PINEIELYPN FLNDSISLAG VDGDFLPLEY SVMPPEQKAQ ARVMMRKRVA  60
PAPLADYNNS CVLANNYKKQ KGRRRERIVQ QQQQRKCSHC ETTQTPQWRM GPLGPKTLCN  120
ACGVRYKSGR LLPEYRPAAS PTFDGDKHSN FHKKILKKKK KGFMG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15580RKRVAPAPLADYNNSCVLANNYKKQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432143.21e-122GATA transcription factor 7
RefseqXP_015384388.11e-122GATA transcription factor 7-like
TrEMBLV4SCR61e-120V4SCR6_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006432143.11e-121(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.17e-33GATA transcription factor 4