PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10003451m

Common Name

CICLE_v10003451mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 361aa MW: 42722.6 Da PI: 7.7532

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10003451m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.8	1.1e-21	78	174	1	86
trihelix 1 rWtkqevlaLiearr........emeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77 +Wt+++v++Li ++ +++ + +k ++W+ vsk+m erg+++sp+qC++k++nlnk ykk+++ +++ ++++++ Ciclev10003451m 78 KWTEEMVKLLIYTVSyirqfalsNVG------NgrnepsflQKIGKWKVVSKVMVERGYRVSPQQCEDKFNNLNKTYKKLNDVLGRGmSCKVVE 165 7***********944444333333......133455677********************************************8899999 PP trihelix 78 tcpyfdqle 86 + + +d+++ Ciclev10003451m 166 NPKILDEID 174 999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-18	78	199	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MQLHHQQDPN FYQPSCVVQV QPESVFPLRW QYREEQPLSY IDYNEDQRGK NLLMDCAIPG 60 VDEHYAVEGI RTPWRRIKWT EEMVKLLIYT VSYIRQFALS NVGNGRNEPS FLQKIGKWKV 120 VSKVMVERGY RVSPQQCEDK FNNLNKTYKK LNDVLGRGMS CKVVENPKIL DEIDIPEGKK 180 DNAKKILSSK QLFFEQMCSY HSGNQLCLPH DPDLQRSLQL ALSKKLDYDK QEQDPGAYTQ 240 DNETEDSNLK SMDYNGILED HSQHALTDLE GFHPEGSTAD GLWEQWVAFR SCRLKLQRLQ 300 VNARILRLEN RRFKWQRICW RKNRELIRMR LENERLKIEN ERIELELKYK EMRADYDLTV 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MQLHHQQDPN FYQPSCVVQV QPESVFPLRW QYREEQPLSY IDYNEDQRGK NLLMDCAIPG  60
VDEHYAVEGI RTPWRRIKWT EEMVKLLIYT VSYIRQFALS NVGNGRNEPS FLQKIGKWKV  120
VSKVMVERGY RVSPQQCEDK FNNLNKTYKK LNDVLGRGMS CKVVENPKIL DEIDIPEGKK  180
DNAKKILSSK QLFFEQMCSY HSGNQLCLPH DPDLQRSLQL ALSKKLDYDK QEQDPGAYTQ  240
DNETEDSNLK SMDYNGILED HSQHALTDLE GFHPEGSTAD GLWEQWVAFR SCRLKLQRLQ  300
VNARILRLEN RRFKWQRICW RKNRELIRMR LENERLKIEN ERIELELKYK EMRADYDLTV  360
*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006432257.2	0.0	uncharacterized protein LOC18042359
TrEMBL	A0A2H5PHA4	0.0	A0A2H5PHA4_CITUN; Uncharacterized protein
TrEMBL	V4SXE6	0.0	V4SXE6_9ROSI; Uncharacterized protein
STRING	XP_006432257.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5042	27	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	3e-82	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Ciclev10003451m
Entrez Gene	18042359