PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10003110m | ||||||||
Common Name | CICLE_v10003110mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 122aa MW: 14178 Da PI: 5.1892 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.1 | 9.6e-11 | 82 | 103 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++++rtG C++G +CkF+H+ Ciclev10003110m 82 DCSYYLRTGRCRFGMSCKFNHP 103 6********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.807 | 77 | 105 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-4 | 77 | 104 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-6 | 79 | 105 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-8 | 82 | 103 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-5 | 83 | 102 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MHKLLLENIV LWGNNNLVFR LKLVNFQETT NLDIEDPEDQ VDSDTEEEVE NVDKNNKQVD 60 EITGNQMTRR KFCYPQRPGV HDCSYYLRTG RCRFGMSCKF NHPVPRQIQV SFGFCDTLFS 120 A* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024040723.1 | 1e-64 | zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | V4SVX7 | 5e-86 | V4SVX7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006431697.1 | 9e-87 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21248 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06410.1 | 4e-15 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10003110m |
Entrez Gene | 18041604 |