PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10002208m
Common NameCICLE_v10002208mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 261aa    MW: 29103.8 Da    PI: 8.5668
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10002208mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-19101155256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++tk+q  +Le+ F++++++s ++++ LA+kl+L  rqV vWFqNrRa+ k
  Ciclev10002208m 101 RKKLRLTKQQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSK 155
                      78889************************************************98 PP
2HD-ZIP_I/II117.76.3e-38101189189
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                      +kk+rl+k+q ++LE++F+e+++L+p++K+ la++L+l+prqv+vWFqnrRAR k+kq+E+++e Lkr++++lk+en+rL++ev+eL++
  Ciclev10002208m 101 RKKLRLTKQQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQTEVECELLKRCCEKLKDENKRLQREVQELKS 189
                      69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-1884151IPR009057Homeodomain-like
SuperFamilySSF466899.84E-1988158IPR009057Homeodomain-like
PROSITE profilePS5007117.44397157IPR001356Homeobox domain
SMARTSM003891.4E-1599161IPR001356Homeobox domain
CDDcd000864.08E-15100158No hitNo description
PfamPF000463.4E-17101155IPR001356Homeobox domain
PROSITE patternPS000270132155IPR017970Homeobox, conserved site
SMARTSM003403.6E-19157200IPR003106Leucine zipper, homeobox-associated
PfamPF021831.4E-9157191IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEFDDSTCLG LGIQGALPQS DDHDHQKKNG KKLILKDDQL LPSLTLGRRS ENTLKSATKE  60
KESTDVLQQA SCMSMSMSAL SSISNSKGIR DHHEDEGGSP RKKLRLTKQQ FATLEDTFKE  120
HSTLSPKQKQ GLAEKLNLRP RQVEVWFQNR RARSKLKQTE VECELLKRCC EKLKDENKRL  180
QREVQELKSM KLSGAPLYMK LPAPTLTVCP SCDEKLDGGD GRDVYGDGYG DGDGSSTSRS  240
SFTFGSKHLY NSFTHPSAFC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149157RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433687.10.0homeobox-leucine zipper protein HAT9
SwissprotP466032e-63HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBLV4T1B90.0V4T1B9_9ROSI; Uncharacterized protein
STRINGXP_006433687.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3262422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.16e-61HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]