PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10002081m

Common Name

CICLE_v10002081mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NF-YC

Protein Properties

Length: 287aa MW: 31857.1 Da PI: 5.4626

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10002081m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	61.2	2.2e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++ +v++ ++fdfl div r Ciclev10002081m 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSSLHLKHCVQSYNVFDFLRDIVSR 86 5789**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.6E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	1.35E-20	4	89	IPR009072	Histone-fold
Pfam	PF00808	4.8E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMSSLHLKHC VQSYNVFDFL RDIVSRVPDY SHGHSDATSE DRSISKRRKA AGDECNDSDE 120 ESKRSRMHEM GHVTGSGRGR GRGRGRGRGR GARHLERESS HREVEPEPRT APQHGASDNS 180 NSTMLVDNAS ESKEQPKENV IASDGVNPAT RNFDLNADLD ENVDTKTAAP AAPTQPSSAG 240 PSEETKHEEY PGWSLSEMDR MAIDPLQIAN LSRRIDEEEE DYDEEG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	3e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	149	RGRGRGRGRGR
2	141	150	RGRGRGRGRG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006432367.1	0.0	dr1-associated corepressor isoform X1
TrEMBL	V4SXS0	0.0	V4SXS0_9ROSI; Uncharacterized protein
STRING	XP_006432367.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3506	24	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	5e-82	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Ciclev10002081m
Entrez Gene	18040484