PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10001849m

Common Name

CICLE_v10001849mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

TCP

Protein Properties

Length: 323aa MW: 33496.6 Da PI: 8.4957

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10001849m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.6	2.6e-39	38	161	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 + +k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++ + s +ss+s+s s+ Ciclev10001849m 38 TLAKKPSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANFStLNISLRSSGSSSLSApaskss 131 5689*************************************************************99998887445555554422222233333 PP TCP 89 .............................k 89 + Ciclev10001849m 132 lhsaaaalalynnttnnninsggffcgafQ 161 555555666666665554433333333331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-37	44	193	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.489	44	98	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MKIMEHNNNN NQTTASSNNS NPNTTTTTTS TVSAATKTLA KKPSKDRHTK VDGRGRRIRM 60 PAVCAARVFQ LTRELGHKSD GETIEWLLQQ AEPAIIATTG TGTIPANFST LNISLRSSGS 120 SSLSAPASKS SLHSAAAALA LYNNTTNNNI NSGGFFCGAF QQQQQQQLLY NIHETAAATA 180 SACASSSSSS SSASAAAAVA APAAAMWAVA PAAASNGGNG FWMLPEAQMW TFPAHYSGLG 240 RLSSVQMGGH QQQLGVGVLA ESLNNNMGVL GGGVGSNNAY RAPGLAMNIF GQNRQENNND 300 NDNNNNNNQQ TTQASNSGDE ES*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006434590.1	0.0	transcription factor TCP23
Swissprot	Q9LQF0	1e-62	TCP23_ARATH; Transcription factor TCP23
TrEMBL	V4T8L5	0.0	V4T8L5_9ROSI; Uncharacterized protein
STRING	XP_006434590.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7053	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	1e-29	TCP family protein

Link Out ? help Back to Top
Phytozome	Ciclev10001849m
Entrez Gene	18042128