PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001803m
Common NameCICLE_v10001803mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 332aa    MW: 37472.4 Da    PI: 9.6738
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001803mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.4e-182267147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
  Ciclev10001803m 22 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 67
                     899*****************************.***********996 PP
2Myb_DNA-binding58.51.5e-1874117146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T++E+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
  Ciclev10001803m  74 RRPFTEDEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 117
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.2221768IPR017930Myb domain
SuperFamilySSF466892.32E-2921115IPR009057Homeodomain-like
SMARTSM007178.4E-152170IPR001005SANT/Myb domain
PfamPF002493.5E-172267IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-272375IPR009057Homeodomain-like
CDDcd001672.22E-142566No hitNo description
PROSITE profilePS5129427.77669123IPR017930Myb domain
SMARTSM007179.6E-1673121IPR001005SANT/Myb domain
PfamPF002492.2E-1574116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2176122IPR009057Homeodomain-like
CDDcd001671.06E-1276116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEDSGAGSSD DATKSSTSTC PRGHWRPAED EKLRQLVEQY GAQNWNSIAE KLQGRSGKSC  60
RLRWFNQLDP RINRRPFTED EEERLLAAHR IHGNKWALIA RLFPGRTDNA VKNHWHVIMA  120
RKQREQSKLC GKRSHQDTGN IISDQNFIHA RRSRSQDAML SSKFGFDQNS RIFEFRNPNH  180
DRTFAVSPPP SSSLTWAFGA APIVTSSNNS SVDLSRREAG DFFNTSTKVS DQHPYRSCYP  240
NSSAYGSYRG SSSFGVTNYR RFVPSPFGYV KVGDDYESHG VIKKEVIKFS DNSPSHLNLR  300
LSTQQAQADD QSIKHHEEVP FIDFLGVGIT S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-32221227107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5270823e-86HQ527082.1 Gossypium herbaceum clone NBRI_B_1735 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434346.10.0transcription factor MYB115
TrEMBLA0A2H5PI500.0A0A2H5PI50_CITUN; Uncharacterized protein
TrEMBLV4TD410.0V4TD41_9ROSI; Uncharacterized protein
STRINGXP_006434346.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16592913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.18e-67myb domain protein 52