PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ciclev10001534m | ||||||||
Common Name | CICLE_v10001534mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 374aa MW: 42964.7 Da PI: 6.6735 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00018 | 79 | 101 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + +L++H H Ciclev10001534m 79 CSyeGCGKTFIDAASLRKHAHIH 101 77779**************9877 PP | |||||||
2 | zf-C2H2 | 16.2 | 3.1e-05 | 106 | 130 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk F ++s LkrH H Ciclev10001534m 106 YQCHyeGCGKKFLDSSKLKRHFLIH 130 9********************8877 PP | |||||||
3 | zf-C2H2 | 22.4 | 3.3e-07 | 136 | 160 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+Cp Cgk Fs nL++H++tH Ciclev10001534m 136 YVCPheGCGKAFSLDFNLRSHMKTH 160 99**********************9 PP | |||||||
4 | zf-C2H2 | 17.8 | 9.4e-06 | 166 | 190 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dCgk++ + + Lk+Hi +H Ciclev10001534m 166 HICPypDCGKRYAHEYKLKNHIASH 190 679999*****************96 PP | |||||||
5 | zf-C2H2 | 13 | 0.00031 | 229 | 254 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp C k + + + Lk H+++ H Ciclev10001534m 229 YACPyeGCEKAYIHEYKLKLHLKReH 254 89*********************999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 9.3E-14 | 72 | 102 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0046 | 77 | 101 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.074 | 77 | 106 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 79 | 101 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.36E-8 | 80 | 130 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.0E-13 | 103 | 125 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0017 | 106 | 130 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 14.17 | 106 | 135 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 108 | 130 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.16E-14 | 117 | 169 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.1E-20 | 126 | 160 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.882 | 136 | 165 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.7E-4 | 136 | 160 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 138 | 160 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.5E-9 | 161 | 192 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0028 | 166 | 190 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.473 | 166 | 195 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 168 | 191 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.06E-5 | 224 | 252 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.6E-9 | 225 | 251 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.012 | 229 | 254 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.66 | 229 | 259 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 231 | 254 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 374 aa Download sequence Send to blast |
METHFTHSYF ERRPIVKSKT PAVKWFREWV PQDIAATGGK CQILRWVNEK TLKALKEKAK 60 EPEAPEPEPE PTTEVLFLCS YEGCGKTFID AASLRKHAHI HGERQYQCHY EGCGKKFLDS 120 SKLKRHFLIH TGERDYVCPH EGCGKAFSLD FNLRSHMKTH SQENYHICPY PDCGKRYAHE 180 YKLKNHIASH HEKNAAMEVP RYATPPERIT KTPKPPAGVY GSASSERPYA CPYEGCEKAY 240 IHEYKLKLHL KREHPGHMSD ENAENATTNA DNEMDEGSDQ DAYAGKRVNG KSQKKSRAKP 300 NLKMPPAKVT QRKSSTPSPA TLNVVRKQQW TPKEEVYEEE DSEETEEDRD NVEDGFRYGE 360 NNEDDDEETE YED* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ubd_C | 6e-34 | 79 | 190 | 8 | 119 | PROTEIN (YY1 ZINC FINGER DOMAIN) |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Rapidly induced following seed germination, especially in tender cotyledons. {ECO:0000269|PubMed:26961720}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers, to a lower extent in seedlings, stems and leaves, and, at low levels, in roots and senescent leaves. {ECO:0000269|PubMed:26961720}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Dual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006431730.1 | 0.0 | zinc finger transcription factor YY1 | ||||
Swissprot | Q2V3L3 | 1e-159 | YY1_ARATH; Zinc finger transcription factor YY1 | ||||
TrEMBL | V4T0R5 | 0.0 | V4T0R5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006431730.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5859 | 28 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G06634.1 | 1e-145 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Ciclev10001534m |
Entrez Gene | 18041068 |
Publications ? help Back to Top | |||
---|---|---|---|
|