PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001404m
Common NameCICLE_v10000881mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 396aa    MW: 44564.8 Da    PI: 8.3968
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001404mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3452e-1416105299
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      f ++  s++l+  +l lp +f+++++g + +   +tl  +s  +W + l   ++++  ++ kGW  F ++n ++ gD +vF++dg+  f  +v+
  Ciclev10001404m  16 FNIF--SSNLSAECLKLPLQFVRHMEGRTSG--SVTLIGPSWDTWHIDL--IQQDDNLFFDKGWPVFLRDNFIECGDLLVFRYDGELHF--TVQ 101
                      5556..88888888********999988655..6***************..999999**************************996666..9** PP

                      EE-S CS
               B3  96 vfrk 99 
                      +f++
  Ciclev10001404m 102 IFDQ 105
                      9997 PP
2B344.82.3e-14212306198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      f+ ++++ +v+ s  l +p +f  +h   ++ +++++l +++g sW+v+    +k   ++++ +GW  Fv+ n++k gD+++F+l+++ e  l+
  Ciclev10001404m 212 FVRKMKRFNVSGSYTLNIPYQFSMAHL--PNFKTEVVLHNLKGASWTVNSVPtTKVHTSHTFCGGWLAFVRGNEIKLGDICIFELVHKCE--LH 301
                      667777788899999*******99994..346679**************95557777779999*********************998444..59 PP

                      EEEE- CS
               B3  94 vkvfr 98 
                      v ++r
  Ciclev10001404m 302 VYILR 306
                      99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-1912108IPR015300DNA-binding pseudobarrel domain
CDDcd100176.93E-1513104No hitNo description
PROSITE profilePS5086312.90113106IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-1913108IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-1015106IPR003340B3 DNA binding domain
PfamPF023626.2E-1215105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-21207306IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-23209307IPR015300DNA-binding pseudobarrel domain
CDDcd100175.75E-19210306No hitNo description
PROSITE profilePS5086312.802212308IPR003340B3 DNA binding domain
SMARTSM010198.0E-12212308IPR003340B3 DNA binding domain
PfamPF023621.1E-11212306IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDNQPGMLYF RRPCFFNIFS SNLSAECLKL PLQFVRHMEG RTSGSVTLIG PSWDTWHIDL  60
IQQDDNLFFD KGWPVFLRDN FIECGDLLVF RYDGELHFTV QIFDQSGCEK EAAFNSKSTS  120
TGQKREREEA VAHSDKALQS LLKKIRECSS SFESDCIDDN RDREADSCEE TRRCLSLSTI  180
FASPSQPKTC NIKPEDEEKK VAQSFISAFP YFVRKMKRFN VSGSYTLNIP YQFSMAHLPN  240
FKTEVVLHNL KGASWTVNSV PTTKVHTSHT FCGGWLAFVR GNEIKLGDIC IFELVHKCEL  300
HVYILRVGKQ YPDSQRGTTV LTGSNVSSTT ISCKQFDGVP KKVKKNSLKK IQLCNVKGSK  360
SCEIKKHIGT DGNSVSIATC CLPKISHEKS GKAVN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434882.10.0B3 domain-containing protein Os11g0197600 isoform X1
RefseqXP_006434883.10.0B3 domain-containing protein Os11g0197600 isoform X1
RefseqXP_024038867.10.0B3 domain-containing protein Os11g0197600 isoform X1
RefseqXP_024038868.10.0B3 domain-containing protein Os11g0197600 isoform X1
TrEMBLV4T4J80.0V4T4J8_9ROSI; Uncharacterized protein
STRINGXP_006434882.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-18B3 family protein