PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001378m
Common NameCICLE_v10001378mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GeBP
Protein Properties Length: 400aa    MW: 43735 Da    PI: 4.3628
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001378mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573121.15.7e-38123218297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      lfqrlw++eDei lLqG++d+++++g   ++d+  fy+++k++++++++k+qlveK+rrLKkK+++  +k+ sgk++sf+++hdq +fe+s+ki
  Ciclev10001378m 123 LFQRLWTDEDEIELLQGFLDYTTQRGNAHHHDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVINKITSGKDFSFKTAHDQATFEISRKI 216
                      79******************************************************************************************** PP

           DUF573  96 Wg 97 
                      W 
  Ciclev10001378m 217 WS 218
                      *7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.3E-34124218IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MASEQHDTVL PEEDQDLEED EESSEEDDLE ENDDVLPDEE EEDDEEDLNS ASTAAVPSAA  60
AAETPTVTVA FPSSSASAAT VTLALPPAAI DETDPKRQRV AESVTVHEEK KPLPQQLDES  120
RRLFQRLWTD EDEIELLQGF LDYTTQRGNA HHHDTALFYD QIKSKLQLDF NKNQLVEKLR  180
RLKKKYRNVI NKITSGKDFS FKTAHDQATF EISRKIWSST PNVSVLDDED ANNSNNHLVI  240
SHEMRNNNNN NSNYNNNYGF VGGNANEEKV TPRPRKRSRS KAGGNDNVSA GTMNNCENMN  300
VNSGGGVGGE LLSNVMGGMG GRGIGGLAMN AIMPMGFGGA GIGMGMVGFG GSGVGGGSEV  360
VDEKWRKQQI LELEVYSKRL ELVQDQIKVA LEELRSMGG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006471737.10.0probable transcription factor At3g04930
RefseqXP_024040487.10.0probable transcription factor At3g04930
TrEMBLV4T4H80.0V4T4H8_9ROSI; Uncharacterized protein
STRINGXP_006433055.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.23e-52DNA-binding storekeeper protein-related transcriptional regulator