PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001063m
Common NameCICLE_v10001063mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 468aa    MW: 53032 Da    PI: 8.6027
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001063mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.76.7e-16311131098
                      HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      ++  ++l +p k a++    k+ ++t++l+ +sg +W v +  + ++ + +++ GW eFvk++ L e+D++ Fk++g s f   v +f+
  Ciclev10001063m  31 TGFDHQLAIPEKVARNLR--KKLPVTVSLKAPSGFTWVVGI--TTRDHTLYFSHGWPEFVKDHFLGENDILFFKYNGGSHF--DVLMFD 113
                      566789********7666..4599*****************..999999**************************998888..666665 PP
2B341.22.9e-13353442194
                      EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      f  v+ p +v k+  + +p + ++++    +++  +++   ++ ++W  +++++k +++  l++GWk+F+ +n+L+e D++vF  d+  +++++
  Ciclev10001063m 353 FTVVMRPTHVYKRFYMAIPASWMSKYlT-LENQ--DVI-LRLNEKTWITRFQFCKPRCSGGLSGGWKNFAVDNHLDEFDVCVFGPDN-PGTKPM 441
                      778999********************53.3344..455.45688*********99999999***********************764.555555 PP

                      E CS
               B3  94 v 94 
                      v
  Ciclev10001063m 442 V 442
                      4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.59E-1921113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.36622115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-1925113IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.6E-925115IPR003340B3 DNA binding domain
CDDcd100171.20E-1630113No hitNo description
PfamPF023624.3E-1331110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-18348449IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-17351441IPR015300DNA-binding pseudobarrel domain
CDDcd100178.35E-18352449No hitNo description
PROSITE profilePS5086310.87353451IPR003340B3 DNA binding domain
SMARTSM010191.3E-10353451IPR003340B3 DNA binding domain
PfamPF023628.3E-12353442IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MGEACNECRS WEEEIYWNHF QCIHFIQYLH TGFDHQLAIP EKVARNLRKK LPVTVSLKAP  60
SGFTWVVGIT TRDHTLYFSH GWPEFVKDHF LGENDILFFK YNGGSHFDVL MFDGQSQCEK  120
AVSYFVKKCG HTEHSNRRET RRKIRETSVE GIPNSSHCDV DITPPEKGSD DDINKIPVGQ  180
PIVTPASSKR IRRDDTSNEF VRSRRNSYFV KKRKHKDHGS VSQTKRRIGE SCVEGIPNSS  240
DCDVDVTLPE KASNDEINKI PVGEPIVTLD SSKRIWRVDS SNELAHTRRS SRSKTVSTNF  300
AEMLKTKTGD EQTIINGNVA LSPPFTSNRR PVTQDEKNNA LLMAQAVSTT DSFTVVMRPT  360
HVYKRFYMAI PASWMSKYLT LENQDVILRL NEKTWITRFQ FCKPRCSGGL SGGWKNFAVD  420
NHLDEFDVCV FGPDNPGTKP MVLNVSIFRV VNAVVPLTQV APASLQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-1432645021142B3 domain-containing transcription factor VRN1
4i1k_B5e-1432645021142B3 domain-containing transcription factor VRN1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434884.10.0B3 domain-containing protein REM16
RefseqXP_024038869.10.0B3 domain-containing protein REM16
RefseqXP_024038870.10.0B3 domain-containing protein REM16
TrEMBLA0A2H5NGY00.0A0A2H5NGY0_CITUN; Uncharacterized protein
STRINGXP_006434884.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-48B3 family protein