PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10000883m | ||||||||
Common Name | CICLE_v10000881mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | B3 | ||||||||
Protein Properties | Length: 518aa MW: 58014.3 Da PI: 8.2934 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.1 | 3.6e-14 | 175 | 269 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+ ++++ +v+ s l +p +f +h ++ +++++l +++g sW+v+ +k ++++ +GW Fv+ n++k gD+++F+l+++ e l+ Ciclev10000883m 175 FVRKMKRFNVSGSYTLNIPYQFSMAHL--PNFKTEVVLHNLKGASWTVNSVPtTKVHTSHTFCGGWLAFVRGNEIKLGDICIFELVHKCE--LH 264 667777788899999*******99994..346679**************95557777779999*********************998444..59 PP EEEE- CS B3 94 vkvfr 98 v ++r Ciclev10000883m 265 VYILR 269 99987 PP | |||||||
2 | B3 | 49.1 | 1.1e-15 | 409 | 488 | 13 | 95 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 s l +p kfa +h + ++++++l++++g+ W+v+ + k+++ +++ +GW Fv+ n++k gD+++F+l+++ ++v+ Ciclev10000883m 409 SYTLKIPYKFAMAHL--PDCKTEIVLRNLKGECWTVNSLPDSKGRMvHTFCGGWMAFVRGNDIKIGDVCIFELISK--LDMRVH 488 55699******9996..348899***************7766666679999*********************9974..334444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.647 | 1 | 69 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.06E-9 | 1 | 67 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-13 | 5 | 71 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-14 | 6 | 71 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-21 | 170 | 269 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.42E-23 | 172 | 270 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.14E-18 | 173 | 269 | No hit | No description |
Pfam | PF02362 | 1.8E-11 | 175 | 269 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.0E-12 | 175 | 271 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.802 | 175 | 271 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-22 | 389 | 490 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-23 | 390 | 491 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.21E-20 | 395 | 489 | No hit | No description |
PROSITE profile | PS50863 | 12.548 | 397 | 493 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.3E-12 | 397 | 493 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-12 | 406 | 488 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 518 aa Download sequence Send to blast |
MEGRTSGSVT LIGPSWDTWH IDLIQQDDNL FFDKGWPVFL RDNFIECGDL LVFRYDGELH 60 FTVQIFDQSG CEKEAAFNSK STSTGQKRER EEAVAHSDKA LQSLLKKIRE CSSSFESDCI 120 DDNRDREADS CEETRRCLSL STIFASPSQP KTCNIKPEDE EKKVAQSFIS AFPYFVRKMK 180 RFNVSGSYTL NIPYQFSMAH LPNFKTEVVL HNLKGASWTV NSVPTTKVHT SHTFCGGWLA 240 FVRGNEIKLG DICIFELVHK CELHVYILRV GKQYPDSQRG TTVLTGSNVS STTISCKQFD 300 GVPKKVKKNS LKKIQLCNVK GSKSCEIKKH IGTDGNSVSI ATCCLPKISH EKSEAAAQNR 360 NNVEAKMDST PGGNLRTMMA LDEEKAARSF NSCVPHFVRI MRKFNISGSY TLKIPYKFAM 420 AHLPDCKTEI VLRNLKGECW TVNSLPDSKG RMVHTFCGGW MAFVRGNDIK IGDVCIFELI 480 SKLDMRVHIT GVGRKEVDLE SGKLTSNESS TVDHPLF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006434880.1 | 0.0 | B3 domain-containing protein Os03g0620400 isoform X2 | ||||
TrEMBL | V4TEN9 | 0.0 | V4TEN9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006434882.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-16 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10000883m |
Entrez Gene | 18042612 |