PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10000881m
Common NameCICLE_v10000881mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 518aa    MW: 58014.3 Da    PI: 8.2934
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10000881mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.13.6e-14175269198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      f+ ++++ +v+ s  l +p +f  +h   ++ +++++l +++g sW+v+    +k   ++++ +GW  Fv+ n++k gD+++F+l+++ e  l+
  Ciclev10000881m 175 FVRKMKRFNVSGSYTLNIPYQFSMAHL--PNFKTEVVLHNLKGASWTVNSVPtTKVHTSHTFCGGWLAFVRGNEIKLGDICIFELVHKCE--LH 264
                      667777788899999*******99994..346679**************95557777779999*********************998444..59 PP

                      EEEE- CS
               B3  94 vkvfr 98 
                      v ++r
  Ciclev10000881m 265 VYILR 269
                      99987 PP
2B349.11.1e-154094881395
                      TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      s  l +p kfa +h   + ++++++l++++g+ W+v+   + k+++ +++ +GW  Fv+ n++k gD+++F+l+++    ++v+
  Ciclev10000881m 409 SYTLKIPYKFAMAHL--PDCKTEIVLRNLKGECWTVNSLPDSKGRMvHTFCGGWMAFVRGNDIKIGDVCIFELISK--LDMRVH 488
                      55699******9996..348899***************7766666679999*********************9974..334444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.647169IPR003340B3 DNA binding domain
CDDcd100171.06E-9167No hitNo description
Gene3DG3DSA:2.40.330.103.2E-13571IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-14671IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-21170269IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-23172270IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-18173269No hitNo description
PfamPF023621.8E-11175269IPR003340B3 DNA binding domain
SMARTSM010198.0E-12175271IPR003340B3 DNA binding domain
PROSITE profilePS5086312.802175271IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-22389490IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-23390491IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-20395489No hitNo description
PROSITE profilePS5086312.548397493IPR003340B3 DNA binding domain
SMARTSM010194.3E-12397493IPR003340B3 DNA binding domain
PfamPF023621.4E-12406488IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MEGRTSGSVT LIGPSWDTWH IDLIQQDDNL FFDKGWPVFL RDNFIECGDL LVFRYDGELH  60
FTVQIFDQSG CEKEAAFNSK STSTGQKRER EEAVAHSDKA LQSLLKKIRE CSSSFESDCI  120
DDNRDREADS CEETRRCLSL STIFASPSQP KTCNIKPEDE EKKVAQSFIS AFPYFVRKMK  180
RFNVSGSYTL NIPYQFSMAH LPNFKTEVVL HNLKGASWTV NSVPTTKVHT SHTFCGGWLA  240
FVRGNEIKLG DICIFELVHK CELHVYILRV GKQYPDSQRG TTVLTGSNVS STTISCKQFD  300
GVPKKVKKNS LKKIQLCNVK GSKSCEIKKH IGTDGNSVSI ATCCLPKISH EKSEAAAQNR  360
NNVEAKMDST PGGNLRTMMA LDEEKAARSF NSCVPHFVRI MRKFNISGSY TLKIPYKFAM  420
AHLPDCKTEI VLRNLKGECW TVNSLPDSKG RMVHTFCGGW MAFVRGNDIK IGDVCIFELI  480
SKLDMRVHIT GVGRKEVDLE SGKLTSNESS TVDHPLF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434880.10.0B3 domain-containing protein Os03g0620400 isoform X2
TrEMBLV4TEN90.0V4TEN9_9ROSI; Uncharacterized protein
STRINGXP_006434882.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-16B3 family protein