PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10000622m
Common NameCICLE_v10000622mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 613aa    MW: 64462.2 Da    PI: 5.7811
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10000622mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.9e-09204249145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 
                      r++WT+eEd+ l+ av++ G g+W+ I r      Rt+ q+  rw+
  Ciclev10000622m 204 RKPWTAEEDLELISAVQKCGEGNWANILRGDFkWDRTASQLSQRWN 249
                      789************************9843235677777777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.616199256IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-14200254IPR009057Homeodomain-like
SuperFamilySSF466893.45E-13200253IPR009057Homeodomain-like
SMARTSM007171.8E-10203254IPR001005SANT/Myb domain
PfamPF002493.4E-8204249IPR001005SANT/Myb domain
CDDcd116606.85E-13205253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MVENTNKKQK KGSISEGDVS SLLQRYTANT VLALLQEVAQ FPDVKLDWNA LVKKTSTGIS  60
NAREYQMLWR HLAYRNTLFD KLEDNAQPLD DDSDLEYELE AFPEVSSEAS TEAAACVKVL  120
IASGLPSDSS LPNSSMVEAP LTINIPNGQS LRASTENSQP SSLMQGMNIT VPVAVQKVPL  180
PAPTPEVLDA NGLIGGSMPP RKKRKPWTAE EDLELISAVQ KCGEGNWANI LRGDFKWDRT  240
ASQLSQRWNI LRKKHGNVIL GSNSSGSQLS EAQLAARHAM SLALDMPVKN ITASCTNTTA  300
GTTSSATMNN PVPSTANAEA SSVANQSKLS PVGSPGSAVK SRVPLKKMPA KSNFGADSSI  360
RAAAVAAGAR IVTPSDAASL LKVAQAKKAI HIMPSGVSSI KSPSAGSASV HLEASPTTRY  420
VRPSLPVVPS SSSPAVTSSA SHPGLVKAAL PKVQHNTSCE QTNAVVSVPG TELQLKPEVK  480
AGEEIKVSGG SVSGNEPSKE IQLDLPKLDA EFKNQAAVAE FENQAAVAEN PDSSSNMEIV  540
ENGQVQSNGN QPEGNGNQNG NDDKMVDSPV ANGENQAAVK QKNSGLPQSS NNEEAELPTL  600
VIDKCSSKNL EV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199205PRKKRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433817.10.0uncharacterized protein LOC18041217
TrEMBLV4T1P30.0V4T1P3_9ROSI; Uncharacterized protein
STRINGXP_006433817.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.13e-75MYB_related family protein