PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10000593m
Common NameCICLE_v10000593mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 626aa    MW: 69481.3 Da    PI: 6.2301
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10000593mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.32.1e-2869153187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW++qe++aL+++r++m+  +r+++ k+plWee+s+k+ e g++rs+k+Ckek+en+ k++k++k++++++  ++ +t+++fdqlea
  Ciclev10000593m  69 RWPRQETMALLKIRSDMDVVFRDASVKGPLWEEISRKLGELGYHRSAKKCKEKFENVFKYHKRTKDSRSSK--GQGKTYRFFDQLEA 153
                      8********************************************************************95..77778*******85 PP
2trihelix107.58.7e-34447532187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k ev aLi++r++++++++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  Ciclev10000593m 447 RWPKVEVEALIKMRTSLDSKYQENGPKGPLWEEISAGMRRLGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 532
                      8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.8E-466128IPR001005SANT/Myb domain
PROSITE profilePS500907.13168126IPR017877Myb-like domain
CDDcd122033.49E-2368133No hitNo description
PfamPF138372.6E-1868153No hitNo description
PROSITE profilePS500907.282440504IPR017877Myb-like domain
SMARTSM007173.5E-4444506IPR001005SANT/Myb domain
CDDcd122036.00E-28446511No hitNo description
PfamPF138375.7E-23446533No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MLVGEASVSG DLAAATTATA TATATVAARE AENEGGGEAA GSIFGSSNSG EDDKSRVLDE  60
AERGFGGNRW PRQETMALLK IRSDMDVVFR DASVKGPLWE EISRKLGELG YHRSAKKCKE  120
KFENVFKYHK RTKDSRSSKG QGKTYRFFDQ LEAFEHHHPP QLQSPSLKPH QASVSAAAVS  180
VAMPAANNPP SSTTIVPSTT TQHITVPHLT NLTSSGAIPS FPSAAATNPT NLPPPQATTN  240
YPSQSNIPSS FHNISPDLPS NSTSSSTSSD LELEGRRNKK RKWRDFFERL MKQVVDKQEE  300
LQMKFLEAIE KREHERMVRE EAWRMQEMTR INREREILGQ ERSIASAKDA AVMAFLQKLA  360
EQQNPGSQVV ISTSNNSIPA PPIILPPVPA PAPVQSQPPP LQPISTPAPA PPPPPPHQQQ  420
PVFSIERTKT DNGGERNNYT GGTSSSRWPK VEVEALIKMR TSLDSKYQEN GPKGPLWEEI  480
SAGMRRLGYN RSSKRCKEKW ENINKYFKKV KESNKKRPED SKTCPYFHQL DALYKERNKL  540
ETSSSVLSNQ LLKPENSVPL MVRPEQQWPP QPEHQQDDQA MEDIESDQNV EEDDKDGDDD  600
EEEDDGGGFE IVPNNKPVNS MDANE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275281RRNKKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434455.10.0trihelix transcription factor GT-2
TrEMBLV4T8A60.0V4T8A6_9ROSI; Uncharacterized protein
STRINGXP_006434455.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-67Trihelix family protein