PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10000496m

Common Name

CICLE_v10000456mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 681aa MW: 78083.1 Da PI: 7.6898

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10000496m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.8	1.1e-20	63	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+e+Ak++GFs+r+++++ + + t+r fvC + g++ ++++++k +r+r+++r+gC+a ++++k + +w+vt + ++HnHel Ciclev10000496m 63 EYYSEFAKSCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPIKTSNENKPQRNRKSSRCGCQAYMRISKVTelgAPEWRVTGFANNHNHELL 156 69***********9998877356667999************99*****************998887889***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-17	63	156	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.5E-20	279	369	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.26	554	590	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.6E-6	560	588	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.7E-5	565	592	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MMSDDAGQML MVYDDPSDQR SLSLDDTSST EESPDETRLS LESTNDVVPY IGQRFPTHDA 60 AYEYYSEFAK SCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPIKTSN ENKPQRNRKS 120 SRCGCQAYMR ISKVTELGAP EWRVTGFANN HNHELLEPNQ VRFLPAYRTI SETDKSRILM 180 FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSI RKLDPEDESV DLLRMCRNIK 240 EKDPNFRYEY TLDSNNRLEN IAWSYASSIQ AYEIFGDAVV FDTTHRLTAL DMPLGIWVGV 300 NNYGVPCFFG CTLLREENLR SFSWALKAFL AFMDGKAPQT ILTDQNMCLK EAIAMEMPVT 360 KHALCIWMIV VKFPSWFNAV LGERYNEWKA EFYRLYNLES IEDFEMGWRD MVNSFGLHTN 420 RHIANLFALR MQWALPYLRS NFFAGMTTTG HSKAINAFIQ RFLGAQTRLA HFVEQVAVAV 480 DFKDQAAEQQ TMQQNLQNIC LKTGAPMESH AASVLTPFAF SKLQEQLVLA AHYASFPFED 540 GFLVRHHTKL EGGRKVYWAP QEGIISCSCH QFEFSGILCR HTLRVLSTGN CFQIPERYLP 600 LRWRKISTHS VKLLQSSPSD HAERIQFLQS MVSSLIAESV KSKERLDLAT EQVSYLLSRI 660 RQQPVSTQGL RDISPLHRNL *

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MMSDDAGQML MVYDDPSDQR SLSLDDTSST EESPDETRLS LESTNDVVPY IGQRFPTHDA  60
AYEYYSEFAK SCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPIKTSN ENKPQRNRKS  120
SRCGCQAYMR ISKVTELGAP EWRVTGFANN HNHELLEPNQ VRFLPAYRTI SETDKSRILM  180
FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSI RKLDPEDESV DLLRMCRNIK  240
EKDPNFRYEY TLDSNNRLEN IAWSYASSIQ AYEIFGDAVV FDTTHRLTAL DMPLGIWVGV  300
NNYGVPCFFG CTLLREENLR SFSWALKAFL AFMDGKAPQT ILTDQNMCLK EAIAMEMPVT  360
KHALCIWMIV VKFPSWFNAV LGERYNEWKA EFYRLYNLES IEDFEMGWRD MVNSFGLHTN  420
RHIANLFALR MQWALPYLRS NFFAGMTTTG HSKAINAFIQ RFLGAQTRLA HFVEQVAVAV  480
DFKDQAAEQQ TMQQNLQNIC LKTGAPMESH AASVLTPFAF SKLQEQLVLA AHYASFPFED  540
GFLVRHHTKL EGGRKVYWAP QEGIISCSCH QFEFSGILCR HTLRVLSTGN CFQIPERYLP  600
LRWRKISTHS VKLLQSSPSD HAERIQFLQS MVSSLIAESV KSKERLDLAT EQVSYLLSRI  660
RQQPVSTQGL RDISPLHRNL *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006431498.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X1
Refseq	XP_006431499.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X2
Refseq	XP_024039994.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X2
Refseq	XP_024039995.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X2
Refseq	XP_024039996.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X2
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	V4SB21	0.0	V4SB21_9ROSI; Uncharacterized protein
TrEMBL	V4UZ79	0.0	V4UZ79_9ROSI; Uncharacterized protein
STRING	XP_006431498.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Ciclev10000496m
Entrez Gene	18042899

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]