PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10000456m

Common Name

CICLE_v10000456mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 703aa MW: 80682.1 Da PI: 7.9285

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10000456m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.8	1.2e-20	85	178	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+e+Ak++GFs+r+++++ + + t+r fvC + g++ ++++++k +r+r+++r+gC+a ++++k + +w+vt + ++HnHel Ciclev10000456m 85 EYYSEFAKSCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPIKTSNENKPQRNRKSSRCGCQAYMRISKVTelgAPEWRVTGFANNHNHELL 178 69***********9998877356667999************99*****************998887889***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-17	85	178	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.8E-20	301	391	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.26	576	612	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.7E-6	582	610	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.7E-5	587	614	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence Send to blast
MHFCYVTDRG SKVYLKGVNE RNMMSDDAGQ MLMVYDDPSD QRSLSLDDTS STEESPDETR 60 LSLESTNDVV PYIGQRFPTH DAAYEYYSEF AKSCGFSIRR HRTEGKDGVG KGLTRRYFVC 120 HRAGNTPIKT SNENKPQRNR KSSRCGCQAY MRISKVTELG APEWRVTGFA NNHNHELLEP 180 NQVRFLPAYR TISETDKSRI LMFAKTGISV QQMMRLMELE KCVEPGYLPF TEKDVRNLLQ 240 SIRKLDPEDE SVDLLRMCRN IKEKDPNFRY EYTLDSNNRL ENIAWSYASS IQAYEIFGDA 300 VVFDTTHRLT ALDMPLGIWV GVNNYGVPCF FGCTLLREEN LRSFSWALKA FLAFMDGKAP 360 QTILTDQNMC LKEAIAMEMP VTKHALCIWM IVVKFPSWFN AVLGERYNEW KAEFYRLYNL 420 ESIEDFEMGW RDMVNSFGLH TNRHIANLFA LRMQWALPYL RSNFFAGMTT TGHSKAINAF 480 IQRFLGAQTR LAHFVEQVAV AVDFKDQAAE QQTMQQNLQN ICLKTGAPME SHAASVLTPF 540 AFSKLQEQLV LAAHYASFPF EDGFLVRHHT KLEGGRKVYW APQEGIISCS CHQFEFSGIL 600 CRHTLRVLST GNCFQIPERY LPLRWRKIST HSVKLLQSSP SDHAERIQFL QSMVSSLIAE 660 SVKSKERLDL ATEQVSYLLS RIRQQPVSTQ GLRDISPLHR NL*

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence Send to blast

MHFCYVTDRG SKVYLKGVNE RNMMSDDAGQ MLMVYDDPSD QRSLSLDDTS STEESPDETR  60
LSLESTNDVV PYIGQRFPTH DAAYEYYSEF AKSCGFSIRR HRTEGKDGVG KGLTRRYFVC  120
HRAGNTPIKT SNENKPQRNR KSSRCGCQAY MRISKVTELG APEWRVTGFA NNHNHELLEP  180
NQVRFLPAYR TISETDKSRI LMFAKTGISV QQMMRLMELE KCVEPGYLPF TEKDVRNLLQ  240
SIRKLDPEDE SVDLLRMCRN IKEKDPNFRY EYTLDSNNRL ENIAWSYASS IQAYEIFGDA  300
VVFDTTHRLT ALDMPLGIWV GVNNYGVPCF FGCTLLREEN LRSFSWALKA FLAFMDGKAP  360
QTILTDQNMC LKEAIAMEMP VTKHALCIWM IVVKFPSWFN AVLGERYNEW KAEFYRLYNL  420
ESIEDFEMGW RDMVNSFGLH TNRHIANLFA LRMQWALPYL RSNFFAGMTT TGHSKAINAF  480
IQRFLGAQTR LAHFVEQVAV AVDFKDQAAE QQTMQQNLQN ICLKTGAPME SHAASVLTPF  540
AFSKLQEQLV LAAHYASFPF EDGFLVRHHT KLEGGRKVYW APQEGIISCS CHQFEFSGIL  600
CRHTLRVLST GNCFQIPERY LPLRWRKIST HSVKLLQSSP SDHAERIQFL QSMVSSLIAE  660
SVKSKERLDL ATEQVSYLLS RIRQQPVSTQ GLRDISPLHR NL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006431498.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X1
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	V4SB21	0.0	V4SB21_9ROSI; Uncharacterized protein
STRING	XP_006431498.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Ciclev10000456m
Entrez Gene	18042899

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]