PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10000252m
Common NameCICLE_v10000255mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 859aa    MW: 97434.2 Da    PI: 6.786
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10000252mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1522.4e-1666140290
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      fY++YA+++GFs+ +   ++ k +g i++ +f Cs+e +++++ ++              C+a l++++++++kw vtk++++HnH+++
  Ciclev10000252m  66 FYDAYARHMGFSTHVGPFTRAKPDGPIITWDFACSREVFKRKNVES--------------CNAVLRIERKDSEKWTVTKFVEDHNHSMV 140
                      9***************************************999877..............**************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-1366140IPR004330FAR1 DNA binding domain
PfamPF105513.1E-29271363IPR018289MULE transposase domain
PfamPF044343.8E-12543582IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.313548584IPR007527Zinc finger, SWIM-type
SMARTSM005751.6E-8559586IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MEVEGVEVDG EKGDDPVATN AEFDKSKKQN VTKNSSEIEV TNHDNGESSK PYVGMEFDSE  60
DAAKTFYDAY ARHMGFSTHV GPFTRAKPDG PIITWDFACS REVFKRKNVE SCNAVLRIER  120
KDSEKWTVTK FVEDHNHSMV TPNKVQYLRP RRHFAGATKN VAEALDVSGD VYITTDGNHL  180
SYEPNSIRNS LPVDSSRSTR NMGPVNYLRQ PSRMRSLGRD AQNLLNYFKK MQAENPGFYY  240
AIQLDDDNRM TNVFWADARS RMAYNHFGDA VIFDTMYRPN QYQVPFAPFT GVNHHGQMVL  300
FGCALLLDES EASFTWLFRT WLSAMNDRPP VSITTDQDRA IQVAVAQVLP ETCHCICKWH  360
ILREGQERLA HIYLAHPSFY GELYSCINFC ETIEEFESSW CSLLDKYDLQ KNEWLHAVYN  420
ARRQWAPVYF RGTFFAALSS NQGISSFFDG YVHQQTTIPL FFKQYERALE NSREKEIELD  480
YDTICTTPVL KTPSPMEQQA ANLYTKKVFA KFQEELVETF VYTANKIEGD GVLSKFRVAK  540
YEQDDKAYIV SVNVSEMKAS CSCQMFEYSG ILCRHILTVF TVTNVLTLPS HYILKRWTRN  600
AKSSIGLDEQ NTDTQGIETL TLRFNKLCQE AIKYAEVGAL AVETYNVAIS ALKEAGKKVL  660
AAKKNVAKIS PPSSQVVLYS QEDSNKKTPP SVHEMIPSLW PWQEAMPHRF NLNDSGVSVS  720
DLNQPSMVPV SFHRDCGTPD STVVLTCFKS MTWVIENKNS TSASKVAVIN LKLQDYGKKP  780
SGETEVQFRL TKTTLEPMLR SMAYISQQLS APANKVAVIN LKLQDTKTTS GEAEVKFQVS  840
RDTLGSMLRS LAYIREQL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.225520.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432553.10.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_006471345.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X1
RefseqXP_006471347.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X1
RefseqXP_024039846.10.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_024039847.10.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_024039848.10.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_024952507.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X1
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLV4SDV40.0V4SDV4_9ROSI; Uncharacterized protein
STRINGXP_006471345.10.0(Citrus sinensis)
STRINGXP_006432553.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]