PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_44120 | ||||||||
Common Name | KK1_046106 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ARR-B | ||||||||
Protein Properties | Length: 223aa MW: 25522.6 Da PI: 8.3066 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 76.1 | 4.6e-24 | 158 | 207 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kpr+ Wtp LH++F++av+q+ G +kA+Pk+ile+m++ gLt++hv+SHLQ C.cajan_44120 158 KPRVIWTPMLHREFLKAVKQI-GDDKAVPKKILEVMNIAGLTRDHVASHLQ 207 79*******************.9**************************** PP | |||||||
2 | Response_reg | 62.7 | 1.8e-21 | 13 | 121 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 vl +d +p+v+e rq++++ +y +v ++++++ al+l++e + +D+il+ ++mp++dG+e+l++ ++ ++p+iv++a +++ + +a++ Ga C.cajan_44120 13 VLAIDHDPSVLEFTRQICSQLKY-HVVTCTESPFALNLVREIKacIDVILMELDMPNLDGHEFLQHAKKDI-QIPVIVMSADNAKGSVMKAVRNGA 106 7899*******************.9***************9999**********************98866.************************ PP SEEEESS--HHHHHH CS Response_reg 95 kdflsKpfdpeelvk 109 d+ Kp + ++ ++ C.cajan_44120 107 CDYWNKPLHVNQFRN 121 *******99998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 4.0E-28 | 10 | 145 | No hit | No description |
SuperFamily | SSF52172 | 2.99E-27 | 10 | 162 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 3.7E-17 | 11 | 123 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 32.339 | 12 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.5E-17 | 13 | 121 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.38E-19 | 14 | 127 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-23 | 156 | 207 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.06E-15 | 156 | 210 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-22 | 158 | 211 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.9E-6 | 163 | 207 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MSEVSQFPAG LRVLAIDHDP SVLEFTRQIC SQLKYHVVTC TESPFALNLV REIKACIDVI 60 LMELDMPNLD GHEFLQHAKK DIQIPVIVMS ADNAKGSVMK AVRNGACDYW NKPLHVNQFR 120 NMWIHAARKA FKIFRDQNNS SSRESDESEH SCQPPAKKPR VIWTPMLHRE FLKAVKQIGD 180 DKAVPKKILE VMNIAGLTRD HVASHLQVSF CFVYLIFHNC TWL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 9e-15 | 157 | 207 | 4 | 54 | ARR10-B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_44120 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020207938.1 | 1e-138 | two-component response regulator ORR24 | ||||
TrEMBL | A0A151QRZ3 | 1e-166 | A0A151QRZ3_CAJCA; Two-component response regulator ARR2 | ||||
STRING | GLYMA08G05165.1 | 4e-79 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14524 | 5 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31920.1 | 2e-46 | response regulator 10 |