PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_43980

Common Name

KK1_044727

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

SRS

Protein Properties

Length: 310aa MW: 33999.4 Da PI: 8.1298

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_43980	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	202.3	1.4e-62	105	242	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 +g++sCqdCGnqakkdC h+RCRtCCksrg++C+thvkstWvpa+krrerqqqlaa+++++ +++ skr+r+ ++ +++l+s + C.cajan_43980 105 EGGISCQDCGNQAKKDCPHMRCRTCCKSRGYECQTHVKSTWVPASKRRERQQQLAALQEQQ----QRDISKRPRDP------TACTARLPS----S 186 6889**************************************************97766....67999999985......233334443....4 PP DUF702 99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 le ++P+ vss+a frcv+vs ++++++ +aYqtav+igGh+fkGiLyd+G+e+ C.cajan_43980 187 GLEEGHFPAVVSSPAEFRCVKVSCLEEADDRYAYQTAVKIGGHMFKGILYDYGPEN 242 678899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.9E-61	107	241	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.8E-27	109	151	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.5E-23	192	240	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MAGLFPLGGG RGSSNQQYNN QGSEIPHAET WYSKNDDASS YRGLELWNQH QQQQHHYHHH 60 HHVMHPHARP LLQRDLYSSG VGPSRGVSDD QSSSRSALAA MRAAEGGISC QDCGNQAKKD 120 CPHMRCRTCC KSRGYECQTH VKSTWVPASK RRERQQQLAA LQEQQQRDIS KRPRDPTACT 180 ARLPSSGLEE GHFPAVVSSP AEFRCVKVSC LEEADDRYAY QTAVKIGGHM FKGILYDYGP 240 ENSNNNSGNN NYMTGETSAG VGGSQPLNFS VSGAVASSSA ALVDPSSLYQ APHNTFMSAS 300 GTQFFPHTRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_43980

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020207133.1	0.0	protein SHI RELATED SEQUENCE 1
Refseq	XP_020207134.1	0.0	protein SHI RELATED SEQUENCE 1
Refseq	XP_029125912.1	0.0	protein SHI RELATED SEQUENCE 1
Swissprot	Q9SD40	6e-73	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A151QVN5	0.0	A0A151QVN5_CAJCA; Uncharacterized protein
STRING	XP_007156095.1	1e-161	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	2e-51	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]