PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_43758

Common Name

KK1_045713

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

GRAS

Protein Properties

Length: 321aa MW: 36922.1 Da PI: 6.8804

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_43758	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	254.1	5.1e-78	8	319	74	374
GRAS 74 sseelaalklfsevsPilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetg 162 +ee+ a++ ++ vsP+++f+h+taNqaIlea e+e +++H+iDfd+s+G+QWp+L+q+L++++ ++ slRiTg+g+ + +el+et+ C.cajan_43758 8 CEEEFLAFTDLYRVSPYYQFAHFTANQAILEAYEEEeernnKALHVIDFDVSYGFQWPSLIQSLSEKAtsGNRISLRITGFGN----NMKELQETE 99 5677778888**********************9988887889******************99755566*****....9**** PP GRAS 163 erLakfAeelg..vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256 rL +f + +g + fef+ l + ++ +Lr +++E++aVnlv l +l +s++ +++L +v slsP +vv+v qe +++ ++Fl r C.cajan_43758 100 ARLVSFSKGFGnhLVFEFQGL---LRGSSRVINLRKRKNETVAVNLVSYLNTLS---GSMKV--SDTLGFVHSLSPSIVVLVKQEGSRSLKTFLSR 187 ****9973366777776...3344556799999*******999997...45444..56************************** PP GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s.... 346 f+e+l+y++a+fdsl+ lp es er +E++llg+ei++++ + + e++e+W++r+e+ GF ++s+k + qaklll++ C.cajan_43758 188 FTESLHYFAAMFDSLDDCLPLESTERLRIEKKLLGKEIKSMLNYDMEGvDCPKYERMETWKARMENHGFVGRKISSKCVIQAKLLLKMRThYyplq 283 **************************************865444348899****************************9865111111 PP GRAS 347 ...dg...yrveee.sgslv.lgWkdrpLvsvSaWr 374 +g +rv e+ +g ++ lgW++r L+svSaW+ C.cajan_43758 284 feeEGgggFRVSERdEGRVIsLGWQNRYLLSVSAWQ 319 111212336666654555558************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.6	1	286	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-75	8	319	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MLMEEPTCEE EFLAFTDLYR VSPYYQFAHF TANQAILEAY EEEEERNNKA LHVIDFDVSY 60 GFQWPSLIQS LSEKATSGNR ISLRITGFGN NMKELQETEA RLVSFSKGFG NHLVFEFQGL 120 LRGSSRVINL RKRKNETVAV NLVSYLNTLS GSMKVSDTLG FVHSLSPSIV VLVKQEGSRS 180 LKTFLSRFTE SLHYFAAMFD SLDDCLPLES TERLRIEKKL LGKEIKSMLN YDMEGVDCPK 240 YERMETWKAR MENHGFVGRK ISSKCVIQAK LLLKMRTHYY PLQFEEEGGG GFRVSERDEG 300 RVISLGWQNR YLLSVSAWQS L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-48	14	318	98	378	Protein SCARECROW
5b3h_A	5e-48	14	318	97	377	Protein SCARECROW
5b3h_D	5e-48	14	318	97	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_43758

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020207740.1	0.0	protein SCARECROW
TrEMBL	A0A151QT52	0.0	A0A151QT52_CAJCA; DELLA protein GAI1
STRING	GLYMA16G27310.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6200	29	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	2e-50	GRAS family protein