PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_43405 | ||||||||
Common Name | KK1_043967 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | GRAS | ||||||||
Protein Properties | Length: 541aa MW: 60860.9 Da PI: 4.6427 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 107 | 2.6e-33 | 176 | 539 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 +l+ +c ea+++++++la+ lL+ +s+ asp g++++Rl++y+ +++a++ + l+ ++ ++ +al+++++ +Pi k++h++a C.cajan_43405 176 HLMEACGEALEQDQKALAEVLLKCMSQKASPLGESLERLVFYLSQGMANHGHY--------LKGEAF-----KNFEHALRALYQGTPIGKVAHFAA 258 77889*******************************************99877........444444.....4677999***************** PP GRAS 99 NqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrle 187 +aI+ea+ ++ + vHi+Df ++G Wp +++a+a ++ l++T ++ +++ + e t+++L + A+++g+++ + k +e C.cajan_43405 259 ISAIVEALPQDcDVVHIVDFCGGHGEEWPIMIEAIAHMHKP---LKLTSIKWGDHDgtkccsIPCNFEDTKRNLYEHAKSCGLKLVVEE---KGVE 348 ********9887999*********************98777...******99888788888777899****************997665...7888 PP GRAS 188 dleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvksl.sPk....vvvvveqe..adh.nsesFlerflealeyysalfdslea 273 +l + e++ gE l+ n+++ l ++ +v ++++ e+L++ +l ++ ++++ + + n +F f + +y l++s+e+ C.cajan_43405 349 EL-VAEINKTGgrGEFLVFNCMIDLPHMG--RVRSRKHALEFLRVAEDLiNSSgirgMITFGDGGafEKVkNCLNFKSFFDGHVVHYQGLLESIES 441 88.7777555467***************9..7777777899**99998733323333578888763212247889********************* PP GRAS 274 klpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrp 366 +p+ e+r +E+ +l++ i+++ + e ++++ + ++ + ++ +ls+++ ++++ +l+ + s r+e e++++l+l ++ + C.cajan_43405 442 HFPSRFsEARLAMEQLFLQPCISSLDWLQMWE---EMKRGCHVEA---KISLEGCRLSKNVLMEIREVLKGSEgSYQTRIEeEHDNELILEYNGTQ 531 99987559**************9987777777...3333333344...55677789****************97777888845699********** PP GRAS 367 LvsvSaWr 374 L+ +SaW+ C.cajan_43405 532 LLRFSAWK 539 *******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 16.798 | 148 | 517 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.1E-31 | 176 | 539 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 541 aa Download sequence Send to blast |
MMRPEDLQSP WLFYGDMNST FDQGVESYGF TMNNHVVDFE PHDFTMTDDH VDDCGLNTLL 60 SSLEDTTSEI CSITFPSSPI FPNDHVQFPI NEETIYLPSL MELDDFDSIL SAQIVSSQSE 120 SVGSFFPSQN LSSSEVENDA WSPNPSVMSE SSSIHTSPLT LPLEHMEIDN QVSLPHLMEA 180 CGEALEQDQK ALAEVLLKCM SQKASPLGES LERLVFYLSQ GMANHGHYLK GEAFKNFEHA 240 LRALYQGTPI GKVAHFAAIS AIVEALPQDC DVVHIVDFCG GHGEEWPIMI EAIAHMHKPL 300 KLTSIKWGDH DGTKCCSIPC NFEDTKRNLY EHAKSCGLKL VVEEKGVEEL VAEINKTGGR 360 GEFLVFNCMI DLPHMGRVRS RKHALEFLRV AEDLINSSGI RGMITFGDGG AFEKVKNCLN 420 FKSFFDGHVV HYQGLLESIE SHFPSRFSEA RLAMEQLFLQ PCISSLDWLQ MWEEMKRGCH 480 VEAKISLEGC RLSKNVLMEI REVLKGSEGS YQTRIEEEHD NELILEYNGT QLLRFSAWKK 540 N |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_43405 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020206599.1 | 0.0 | nodulation-signaling pathway 2 protein | ||||
TrEMBL | A0A151QXR0 | 0.0 | A0A151QXR0_CAJCA; Nodulation-signaling pathway 2 protein | ||||
STRING | GLYMA18G43580.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4274 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 4e-14 | RGA-like 1 |