PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_43297 | ||||||||
Common Name | KK1_044006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | G2-like | ||||||||
Protein Properties | Length: 237aa MW: 26702.6 Da PI: 9.8502 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.6 | 2.8e-28 | 13 | 70 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPkti...lelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFveav++LGG++ AtPk i +++m+v L ++h+kSHLQkYR+ C.cajan_43297 13 KERLRWTQQLHDRFVEAVNKLGGPDSATPKGIlkgMKAMGVSELNIYHIKSHLQKYRI 70 68******************************3333567889999************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.627 | 10 | 73 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-27 | 11 | 71 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-14 | 12 | 70 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-22 | 13 | 71 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.8E-7 | 15 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.6E-13 | 102 | 141 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MGSTRSRASA TAKERLRWTQ QLHDRFVEAV NKLGGPDSAT PKGILKGMKA MGVSELNIYH 60 IKSHLQKYRI SKLIPESPTR GKLEKRSISD ILPNFSSISA LQLKEVLQMQ TEMQNRLSDK 120 TEVQRSLKLK IEAQGKYMER IGQSNHSKTI IEKACKPFAT TIASLPCLCE ESESLRTQLE 180 EEHQSSKKQK ISEEGVFLTS FEHASSTPLE FNNQTWNLSW SQLAAACQSP LVPNFLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-18 | 12 | 72 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-18 | 12 | 72 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-18 | 12 | 72 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-18 | 12 | 72 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-18 | 12 | 72 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-18 | 12 | 72 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-18 | 12 | 72 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-18 | 12 | 72 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_43297 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092223 | 0.0 | BT092223.1 Soybean clone JCVI-FLGm-10K14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020206627.1 | 1e-175 | myb family transcription factor PHL7 | ||||
Swissprot | Q9SJW0 | 3e-44 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A151QXJ0 | 1e-174 | A0A151QXJ0_CAJCA; Myb family transcription factor APL | ||||
STRING | GLYMA18G43130.2 | 1e-145 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10659 | 25 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-46 | G2-like family protein |