PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_42380 | ||||||||
Common Name | KK1_041148 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NF-YB | ||||||||
Protein Properties | Length: 180aa MW: 19883.7 Da PI: 6.4984 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 132.1 | 1.8e-41 | 1 | 87 | 8 | 94 |
NF-YB 8 lPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 +P++n++rim+kvlP +ak++++aket+q cvsefi+f+tsea+++cq+e+r+ ++++d+lwa+ tlGf++yv pl +lk+yr+ e C.cajan_42380 1 MPVTNLVRIMRKVLPPQAKVAEQAKETMQVCVSEFIGFITSEANERCQKEHRRIVTAEDILWAMDTLGFDNYVGPLVSFLKRYRQSE 87 7***********************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.3E-36 | 1 | 87 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.93E-28 | 1 | 87 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.7E-21 | 1 | 64 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.8E-12 | 28 | 46 | No hit | No description |
PRINTS | PR00615 | 2.8E-12 | 47 | 65 | No hit | No description |
PRINTS | PR00615 | 2.8E-12 | 66 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MPVTNLVRIM RKVLPPQAKV AEQAKETMQV CVSEFIGFIT SEANERCQKE HRRIVTAEDI 60 LWAMDTLGFD NYVGPLVSFL KRYRQSEVPN LGGRGRVPLP QVVGTYPIIS SSSSPSPSPS 120 PSLLSPQYMM ACYGPNFPPS QNWCQGMFDS SGMCEFYDDA SGGSGNVVSD FDPLNIHKRA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-37 | 1 | 85 | 13 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_42380 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029125395.1 | 1e-133 | nuclear transcription factor Y subunit B-9 | ||||
TrEMBL | A0A151R545 | 1e-131 | A0A151R545_CAJCA; Nuclear transcription factor Y subunit B-9 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2728 | 32 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21970.1 | 1e-40 | NF-YB family protein |