PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_40512 | ||||||||
Common Name | KK1_038262 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 168aa MW: 19499.4 Da PI: 10.3175 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.1 | 9.6e-28 | 12 | 62 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ienk+nrqvtfskRr+g+ KKA+E+SvLCda+va+i+f s+gkl+++ss C.cajan_40512 12 KQIENKINRQVTFSKRRTGLRKKAHEISVLCDAQVALIVFNSKGKLFDFSS 62 78***********************************************96 PP | |||||||
2 | K-box | 80.7 | 3.4e-27 | 87 | 160 | 11 | 84 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 ++ + +++ + kL ++e L+r++R+++G+dL++Lsl+eLq+Le+qL++++k+iR++Kn+++ e+i++lqkk C.cajan_40512 87 DESQGNWSLQCFKLTGKVEVLERNLRNFVGQDLDPLSLRELQSLEHQLDTAIKRIRTRKNQVMNESISYLQKKV 160 567789******************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.782 | 4 | 64 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-35 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-31 | 5 | 81 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.64E-38 | 5 | 78 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 6 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-29 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.1E-24 | 14 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-29 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-29 | 41 | 62 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.1E-22 | 88 | 160 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.665 | 90 | 168 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
LLKMGRGRVQ LKQIENKINR QVTFSKRRTG LRKKAHEISV LCDAQVALIV FNSKGKLFDF 60 SSESSMENVL ERYERHAHLG QLVGDGDESQ GNWSLQCFKL TGKVEVLERN LRNFVGQDLD 120 PLSLRELQSL EHQLDTAIKR IRTRKNQVMN ESISYLQKKV TGYYWIFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-20 | 4 | 77 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 2e-20 | 4 | 77 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 2e-20 | 4 | 77 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 2e-20 | 4 | 77 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 2e-20 | 4 | 77 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 2e-20 | 4 | 77 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 2e-20 | 4 | 77 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 2e-20 | 4 | 77 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_40512 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 7e-52 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020202293.1 | 1e-112 | truncated transcription factor CAULIFLOWER A isoform X1 | ||||
Swissprot | D7SMN6 | 6e-78 | FULL_VITVI; Agamous-like MADS-box protein FUL-L | ||||
TrEMBL | A0A151RD70 | 1e-120 | A0A151RD70_CAJCA; Agamous-like MADS-box protein AGL8 (Fragment) | ||||
STRING | GLYMA13G06811.1 | 1e-103 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 9e-74 | AGAMOUS-like 8 |
Publications ? help Back to Top | |||
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