PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_39770 | ||||||||
Common Name | KK1_041246 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | TCP | ||||||||
Protein Properties | Length: 150aa MW: 16209.3 Da PI: 9.6846 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 102 | 9.9e-32 | 20 | 117 | 6 | 103 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..kaaksaakskk 99 + ++++hTkv+gR RRv l+ +caar+F+L++eLG+++ ++ti WLl+qa+pai+++tg++ s +s++ a++sss++ ++++ ++ + ++ ++ C.cajan_39770 20 KGNKDRHTKVNGRERRVLLPPLCAARVFQLTRELGYKTHGETIGWLLRQAEPAIIAATGNGVSLSSSMVASTSSSEG--KNIAgpREDSLGNNASN 113 5689********************************************************88888666333333333..34442233333332222 PP TCP 100 sqks 103 ++++ C.cajan_39770 114 KSQQ 117 2222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.0E-27 | 21 | 113 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 23.672 | 22 | 76 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MNSETPSPLK ATSTKLPPQK GNKDRHTKVN GRERRVLLPP LCAARVFQLT RELGYKTHGE 60 TIGWLLRQAE PAIIAATGNG VSLSSSMVAS TSSSEGKNIA GPREDSLGNN ASNKSQQDSL 120 PLDFDLLANY NLEFSANEIA MIQSLMTRLA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_39770 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020204756.1 | 1e-107 | transcription factor PCF1 | ||||
Swissprot | Q9FTA2 | 3e-27 | TCP21_ARATH; Transcription factor TCP21 | ||||
TrEMBL | A0A151R4T2 | 1e-106 | A0A151R4T2_CAJCA; Transcription factor TCP21 | ||||
STRING | GLYMA11G20201.1 | 1e-60 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 2e-28 | TCP family protein |
Publications ? help Back to Top | |||
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