PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_37714 | ||||||||
Common Name | KK1_037562 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 210aa MW: 22925.6 Da PI: 7.8993 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0014 | 117 | 139 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F ++ L H +H C.cajan_37714 117 FECSSCNKVFGSHQALGGHRASH 139 89************999999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.73E-7 | 17 | 40 | No hit | No description |
SMART | SM00355 | 0.02 | 18 | 40 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.0E-7 | 18 | 42 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.598 | 18 | 45 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.6E-4 | 19 | 40 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 20 | 40 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.21 | 117 | 139 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.4E-10 | 117 | 140 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.554 | 117 | 144 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 119 | 139 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.73E-7 | 151 | 178 | No hit | No description |
SMART | SM00355 | 0.13 | 156 | 178 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.369 | 156 | 178 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.6E-12 | 156 | 180 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 158 | 178 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGDDAWKGKR SEAEGEPRPC TECGKKFWSW KALFGHMRCH PERQWRGINP PPNLNLMRAQ 60 QQPRDEQVSV SMSMSMTQED HEVAACLLLL ANANANANAN ANANANANAN ASCSDQFECS 120 SCNKVFGSHQ ALGGHRASHK NVKGCFANSE ENNNGHKCSI CQRVFSTGQA LGGHKRCHWD 180 KPFHSLDLNL PPPSSSSSSP PLTLDLTLGL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_37714 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020240536.2 | 1e-155 | zinc finger protein ZAT3 | ||||
Swissprot | O65499 | 4e-67 | ZAT3_ARATH; Zinc finger protein ZAT3 | ||||
TrEMBL | A0A151RES6 | 1e-154 | A0A151RES6_CAJCA; Uncharacterized protein | ||||
STRING | XP_007131374.1 | 2e-79 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6667 | 7 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 1e-54 | C2H2-like zinc finger protein |