PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_37122 | ||||||||
Common Name | KK1_036946 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 477aa MW: 52332.5 Da PI: 9.8004 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.5 | 2.4e-05 | 70 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H C.cajan_37122 70 FICEVCNKGFQREQNLQLHRRGH 92 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.2 | 0.00055 | 146 | 168 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ C.cajan_37122 146 WKCDKCSKKYAVQSDWKAHSKTC 168 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.1E-6 | 69 | 92 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.91E-8 | 69 | 92 | No hit | No description |
PROSITE profile | PS50157 | 10.99 | 70 | 92 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 2.3E-5 | 70 | 92 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0052 | 70 | 92 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 111 | 141 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.1E-5 | 134 | 167 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.91E-8 | 141 | 166 | No hit | No description |
SMART | SM00355 | 150 | 146 | 166 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MASASSSTPF LGIRQENQSQ VTQQSTAASS NTSPPTTVPQ KKRRNQPGTP YPDAEVIALS 60 PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KSTKEPKRKV YLCPEPTCVH 120 HDPSRALGDL TGIKKHYSRK HGEKKWKCDK CSKKYAVQSD WKAHSKTCGT REYRCDCGTL 180 FSRRDSFITH RAFCDALAHE SARHPSNLNP LGTHLYGTNH ISLGLVQSPP QSSFFMTDPN 240 QAFQDLQSQQ QGSLFSSKQL HGLMQLPDLQ GTTNNSTSAS SVSASPNNTN LFNLSFFPNV 300 SNQVGSGLSS LFGNSSVQQD HNMSPHMSAT ALLQKAAQMG STTTTNGSSS LLRGTEELGM 360 RSSMENEHGN HLRGLMNSFA NGNTSMFGNV KGNENNLGQF HNVVEEPKKL SQNLGVCFGG 420 SDKLTLDFLG VGGMVRNMNG SGFSQRDQQQ HSMGTMSPLD PKLESAHANQ HFGTSTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-35 | 142 | 206 | 3 | 67 | Zinc finger protein JACKDAW |
5b3h_F | 2e-35 | 142 | 206 | 3 | 67 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_37122 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC160454 | 1e-160 | AC160454.31 Glycine max cultivar Williams 82 clone gmw1-15k6, complete sequence. | |||
GenBank | AP015043 | 1e-160 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020240064.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_020240065.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Swissprot | Q8GYC1 | 1e-136 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
TrEMBL | A0A151RGC0 | 0.0 | A0A151RGC0_CAJCA; Zinc finger protein NUTCRACKER | ||||
STRING | XP_007153117.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1536 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-105 | indeterminate(ID)-domain 5 |
Publications ? help Back to Top | |||
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