PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_36307
Common NameKK1_035186
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 392aa    MW: 44302.6 Da    PI: 10.0408
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_36307genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.97.9e-18141229197
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    f+k +++s+v +  +l lp kf+eeh   +     ++lede+g ++e  +i ++++    +++GW+ F+ +++L++gD +vF+l++ s+f  ++ +
  C.cajan_36307 141 FIKSMVRSHVYSCFWLGLPSKFCEEHLPRT--VYGMVLEDENGSEYEAVYIGNRSG----ISGGWRAFALDHKLDDGDALVFELIEGSRF--KIYI 228
                    89************************5333..345***************545554....99***********************88888..5555 PP

                    E CS
             B3  97 f 97 
                    +
  C.cajan_36307 229 V 229
                    5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.24E-22134230IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.8E-20134230IPR015300DNA-binding pseudobarrel domain
CDDcd100173.38E-25139230No hitNo description
PfamPF023625.5E-16141229IPR003340B3 DNA binding domain
SMARTSM010193.9E-22141232IPR003340B3 DNA binding domain
PROSITE profilePS5086312.435141232IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MLVNMMFYSV SNFDDQSIYL VSPFAFKDLG ISRISKNLTE ITSSAKKTLH HLPKLKPKKT  60
NGEVEPRRSS RVRNPVPSYR EDVSIDLPPL RKRSRSNSST WGSYVARPLD EIKEATEEER  120
LRALQAAEAL QINLNSSNPS FIKSMVRSHV YSCFWLGLPS KFCEEHLPRT VYGMVLEDEN  180
GSEYEAVYIG NRSGISGGWR AFALDHKLDD GDALVFELIE GSRFKIYIVR AFPDSVEEKG  240
MDILEKEGNM HETKVSKAAC NIESESKTKK PKQAAVYKTT EPEFSQEHLP DGVNPTKKSK  300
SSQKEMQKTS KGKVQIKTDK SKAAVKLSNK TRKRRQGITN EIGDLGKLEK NGFVQDAADC  360
KLEKLELIQE ATKCVSQKAR KKPAPKYFRK KA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1330335TRKRRQ
2377390KARKKPAPKYFRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_36307
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150368e-69AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029124522.10.0putative B3 domain-containing protein At5g58280
TrEMBLA0A151RLE10.0A0A151RLE1_CAJCA; Putative B3 domain-containing protein At5g58280 family
STRINGGLYMA02G40400.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124332328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.16e-47B3 family protein