PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_35952
Common NameKK1_038752
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HD-ZIP
Protein Properties Length: 299aa    MW: 33472.2 Da    PI: 6.7088
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_35952genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.9e-19136190256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    rk+ +++keq  +Lee F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  C.cajan_35952 136 RKKLRLSKEQALVLEETFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 190
                    788899***********************************************98 PP
2HD-ZIP_I/II1201.2e-38136225191
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                    +kk+rlskeq+ +LEe+F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+ kr +++l+een+rL+kev+eLr +l
  C.cajan_35952 136 RKKLRLSKEQALVLEETFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYWKRYCENLTEENRRLQKEVQELR-AL 225
                    69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046186.9E-271106IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.8E-19120186IPR009057Homeodomain-like
SuperFamilySSF466891.33E-19122193IPR009057Homeodomain-like
PROSITE profilePS5007117.67132192IPR001356Homeobox domain
SMARTSM003898.7E-16134196IPR001356Homeobox domain
CDDcd000862.18E-15136193No hitNo description
PfamPF000461.6E-16136190IPR001356Homeobox domain
PROSITE patternPS000270167190IPR017970Homeobox, conserved site
PfamPF021833.9E-9192226IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.4E-25192235IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDEKDDDGLS LGLSLRLGCG ENENSHHSFN MHNPPQSVSN QRASFNNLFH FHDRSSEMCS  60
LLRGIDVNVA PPLSSTEAPP ACDDENGVLS PNSTISSISG KRSEREVNGD ENERESCSRG  120
GGSDQDDGDN DGDTSRKKLR LSKEQALVLE ETFKEHNTLN PKQKQALAKQ LNLRPRQVEV  180
WFQNRRARTK LKQTEVDCEY WKRYCENLTE ENRRLQKEVQ ELRALKLSPQ LYMHMNPPTT  240
LTMCPSCERV AVSSASPSSS AITPSDPPVA NRNPFGPAVQ RPVPVNPWAA MSIRRHAPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134140SRKKLRL
2184192RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_35952
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020202653.10.0homeobox-leucine zipper protein HAT3
SwissprotP466021e-101HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A151RB950.0A0A151RB95_CAJCA; Homeobox-leucine zipper protein HAT3
STRINGGLYMA03G26701.11e-128(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.15e-92homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]