PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_35277 | ||||||||
Common Name | KK1_036304 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ERF | ||||||||
Protein Properties | Length: 152aa MW: 17020 Da PI: 9.9377 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.4e-18 | 29 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g C.cajan_35277 29 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYATPVAAARAYDTAVFYLRG 78 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.0E-38 | 29 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.17E-21 | 29 | 87 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.062 | 29 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-30 | 30 | 87 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.47E-28 | 30 | 88 | No hit | No description |
Pfam | PF00847 | 3.2E-11 | 30 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-12 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-12 | 68 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001078 | Molecular Function | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MKEEGLGDCC SSNSTITRKS EKRKQQEKPY RGIRMRKWGK WVAEIREPNK RSRIWLGSYA 60 TPVAAARAYD TAVFYLRGPS ARLNFPELLS QDDDVSTQQG NMSADSIRKK ATQVGARVDA 120 LQTALQSSSS HSASSHITSE KPDLNEFPKP ED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-15 | 28 | 86 | 4 | 63 | ATERF1 |
3gcc_A | 2e-15 | 28 | 86 | 4 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 24 | RKSEKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00188 | DAP | Transfer from AT1G46768 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_35277 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KX151397 | 1e-136 | KX151397.1 Phaseolus vulgaris genotype BAT 477 DREB5A protein (DREB5A) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020239563.1 | 1e-111 | ethylene-responsive transcription factor RAP2-1 | ||||
Refseq | XP_029124691.1 | 1e-111 | ethylene-responsive transcription factor RAP2-1 | ||||
Swissprot | O22174 | 1e-50 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
Swissprot | Q8LC30 | 4e-51 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | A0A151RI68 | 1e-109 | A0A151RI68_CAJCA; Ethylene-responsive transcription factor RAP2-1 | ||||
STRING | GLYMA06G04490.2 | 3e-89 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23340.1 | 4e-49 | DREB and EAR motif protein 3 |
Publications ? help Back to Top | |||
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