PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_32376
Common NameKK1_033935
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 430aa    MW: 46726.7 Da    PI: 5.4928
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_32376genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS318.81.1e-97614271374
           GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                    lv+lLl++Aea+ss  ++++la+a+L rl+elasp+  ++m+Rl a+f  AL++ l++     + + ++++ +   ++++l a++l++++sP+++f
  C.cajan_32376  61 LVHLLLAAAEALSSgtESHSLARAILVRLNELASPSHgTNMERLGAHFSHALEHLLNG-----AGTAHSTPLP---VTDTLLAFQLLQDMSPYVNF 148
                    68***********9556777************888655********************.....3334445554...8999**************** PP

           GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrled 188
                    +h+taNqaIle++++++r+H++Dfd+sqG+QW++L+qaL+s  ++ p+lRiT++++  +  s  +++etg+rL+ fA++++ pf+f+    +  e+
  C.cajan_32376 149 AHFTANQAILESLAHQKRLHVVDFDVSQGAQWASLIQALSS--SPGPHLRITALSRGGERkSLATVQETGRRLTAFAASVKQPFSFHHCRLDPDET 242
                    ****************************************9..6778*********76667999************************9999**** PP

           GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseeri 283
                    +++++L++ +gEal+ n++l+l +l  ++ ++     ++L+  k+l++ +vvvve+e+   +++ Fl  f+++l+ ysa+fdsle+++p +  +r 
  C.cajan_32376 243 FRPSSLKLVRGEALVFNCILHLPHLAFRPSASVA---SFLEGAKELKASLVVVVEEEVGPiGDGGFLGLFMDSLHRYSAVFDSLEVGFPMQRWARG 335
                    **********************999866555555...8*******************9988*********************************** PP

           GRAS 284 kvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                     vEr+llg++iv  v    +   +e++e+ ++W e+l++ GF+ vp+s  + +qa+ll+  ++ dgyrvee  ++ lvlgWk+r+L+s+S W+
  C.cajan_32376 336 LVERVLLGPRIVGSVGRMFRGgETEEEEEGGSWVEWLGAGGFRGVPISFANHCQANLLVGLFN-DGYRVEELgNNKLVLGWKSRRLLSASLWT 427
                    ***************86544435999999**********************************.******98799999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.57335407IPR005202Transcription factor GRAS
PfamPF035143.9E-9561427IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MIDDPDFLDF SDHHSATTPS SPLIDWDSLA ALVLSPDPPP AEDSDSTVAT SEEEEEEGLR  60
LVHLLLAAAE ALSSGTESHS LARAILVRLN ELASPSHGTN MERLGAHFSH ALEHLLNGAG  120
TAHSTPLPVT DTLLAFQLLQ DMSPYVNFAH FTANQAILES LAHQKRLHVV DFDVSQGAQW  180
ASLIQALSSS PGPHLRITAL SRGGERKSLA TVQETGRRLT AFAASVKQPF SFHHCRLDPD  240
ETFRPSSLKL VRGEALVFNC ILHLPHLAFR PSASVASFLE GAKELKASLV VVVEEEVGPI  300
GDGGFLGLFM DSLHRYSAVF DSLEVGFPMQ RWARGLVERV LLGPRIVGSV GRMFRGGETE  360
EEEEGGSWVE WLGAGGFRGV PISFANHCQA NLLVGLFNDG YRVEELGNNK LVLGWKSRRL  420
LSASLWTSHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-535243010382Protein SCARECROW
5b3h_A3e-53524309381Protein SCARECROW
5b3h_D3e-53524309381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_32376
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020237579.10.0nodulation-signaling pathway 2 protein
SwissprotQ5NE241e-175NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A151RPV40.0A0A151RPV4_CAJCA; Nodulation-signaling pathway 2 protein
STRINGXP_007141073.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-120GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]