PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_32266

Common Name

KK1_031869

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

HSF

Protein Properties

Length: 353aa MW: 40801.5 Da PI: 5.3276

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_32266	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	108.1	6.8e-34	14	105	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl k+ye+++d++ ++++sws +++sf+v+++ efa+++Lp++Fkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F +g+ +l+++i C.cajan_32266 14 FLAKTYEMVDDSSSDSIVSWSVTSKSFIVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANDDFVRGQPHLMKNI 100 9******************999************************************9998.........*************** PP XXXXX CS HSF_DNA-bind 98 krkks 102 +r+k C.cajan_32266 101 HRRKP 105 985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	4.3E-37	4	98	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.77E-34	9	103	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.1E-60	10	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.5E-19	14	37	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.4E-30	14	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.5E-19	52	64	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	53	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.5E-19	65	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MDEAQGSSSS LPPFLAKTYE MVDDSSSDSI VSWSVTSKSF IVWNPPEFAR DLLPRFFKHN 60 NFSSFIRQLN TYGFRKIDPE QWEFANDDFV RGQPHLMKNI HRRKPVHSHS LQNLQAQGPL 120 GESERQSFTD EIEKLKHDKE RLLVELQRYQ HEWQTYEIQV HCSKDRLEKL EQKQRKMVSS 180 VSHVLQKPVI AVNILPLTET MERKRRLPKS SYFNDEASIE DAVETSQMLP RENAENTSVL 240 TLNMERLDQL ETSMAFWEAI AHDYSAVPEP VASKEQPAGT TVAATGVNDV FWEQFLTEDP 300 GASETQEVQS ERKDYDGRKN EGKPSDLNKF WWNIRTANNL PEQMGHVGQA EKT

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MDEAQGSSSS LPPFLAKTYE MVDDSSSDSI VSWSVTSKSF IVWNPPEFAR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANDDFV RGQPHLMKNI HRRKPVHSHS LQNLQAQGPL  120
GESERQSFTD EIEKLKHDKE RLLVELQRYQ HEWQTYEIQV HCSKDRLEKL EQKQRKMVSS  180
VSHVLQKPVI AVNILPLTET MERKRRLPKS SYFNDEASIE DAVETSQMLP RENAENTSVL  240
TLNMERLDQL ETSMAFWEAI AHDYSAVPEP VASKEQPAGT TVAATGVNDV FWEQFLTEDP  300
GASETQEVQS ERKDYDGRKN EGKPSDLNKF WWNIRTANNL PEQMGHVGQA EKT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	5e-23	9	103	24	129	Heat shock factor protein 1
5d5v_B	5e-23	9	103	24	129	Heat shock factor protein 1
5d5v_D	5e-23	9	103	24	129	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	206	ERKRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin. {ECO:0000269\|PubMed:18381353}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_32266

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat and cold stresses and the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, auxin analog). {ECO:0000269\|PubMed:18381353}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY052627	0.0	AY052627.1 Phaseolus acutifolius heat shock transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020235858.1	0.0	heat stress transcription factor A-4c
Swissprot	Q9FK72	1e-111	HFA4C_ARATH; Heat stress transcription factor A-4c
TrEMBL	A0A151RVE5	0.0	A0A151RVE5_CAJCA; Heat stress transcription factor A-4c
STRING	GLYMA05G29470.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3568	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18880.1	1e-109	heat shock transcription factor A4A

Publications ? help Back to Top
Faragó D,Sass L,Valkai I,Andrási N,Szabados L PlantSize Offers an Affordable, Non-destructive Method to Measure Plant Size and Color in Vitro. Front Plant Sci, 2018. 9: p. 219 [PMID:29520290]